Gene detail

Detailed information of KXJ07481.1 in Exaiptasia diaphana

Genomic Location: LJWW01000665.1:34498...40696
NR annotation: XP_020912762.1, ribose-phosphate pyrophosphokinase 2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ58	Ribose-phosphate pyrophosphokinase 1 OS=Bos taurus OX=9913 GN=PRPS1 PE=2 SV=3
P60891	Ribose-phosphate pyrophosphokinase 1 OS=Homo sapiens OX=9606 GN=PRPS1 PE=1 SV=2
Q9D7G0	Ribose-phosphate pyrophosphokinase 1 OS=Mus musculus OX=10090 GN=Prps1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001402 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13793 all species →	Pribosyltran_N	N-terminal domain of ribose phosphate pyrophosphokinase	Domain	Interproscan
PF14572 all species →	Pribosyl_synth	Phosphoribosyl synthetase-associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan
IPR037515 all species →	Family	Ribose-phosphate pyrophosphokinase, bacterial-type	Interproscan
IPR029099 all species →	Domain	Ribose-phosphate pyrophosphokinase, N-terminal domain	Interproscan
IPR000842 all species →	Conserved_site	Phosphoribosyl pyrophosphate synthetase, conserved site	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR005946 all species →	Family	Ribose-phosphate pyrophosphokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10210 all species →	RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004749 all species →	Molecular Function	ribose phosphate diphosphokinase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0009156 all species →	Biological Process	ribonucleoside monophosphate biosynthetic process	Interproscan
GO:0044249 all species →	Biological Process	obsolete cellular biosynthetic process	Interproscan
GO:0009165 all species →	Biological Process	nucleotide biosynthetic process	Interproscan
GO:0002189 all species →	Cellular Component	ribose phosphate diphosphokinase complex	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006015 all species →	Biological Process	5-phosphoribose 1-diphosphate biosynthetic process	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00948	PRPS, prsA; ribose-phosphate pyrophosphokinase	EC:2.7.6.1	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ07481.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

64TPM > 0

2Conditions

32.2Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	11.30	20.45
whole animal · symbiotic	36	33	18.13	32.18

Per sample · hover a bar for the full sample record

Show the sample table (72 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.45
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.51
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.38
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.93
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.79
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.53
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.40
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.11
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.02
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.99
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.97
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.95
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.85
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.76
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.71
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.58
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.46
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.45
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.30
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.62
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.54
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.42
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.11
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.89
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.83
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.10
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.03
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.95
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.50
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.21
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.37
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.18
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.32
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.04
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.45
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.41
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.79
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.51
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.28
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.03
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.99
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.68
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.62
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.59
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.58
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.55
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.53
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.36
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.22
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.17
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.14
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.68
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.06
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.97
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.82
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.59
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.38
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.31
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.23
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.03
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.56
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.41
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.19
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.04
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.