Gene detail

Detailed information of KXJ07489.1 in Exaiptasia diaphana

Genomic Location: LJWW01000664.1:12476...24232
NR annotation: XP_020912756.1, uncharacterized protein LOC110250492 isoform X1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ07489.1

ATGTCTCTTGTAACTGTACTTCGCTCTCCATCCTCTGAGAACACAAGCACATGTACAGACTCGGAGCTAGAAGAAGATGTCGAGGAAGGATCGCCAAGGTCTAGAACATCAAGTTTTGAGGGTTTCTTTGCATCCAAGGGTTCAGCATTTGCTTTACCAGATGGCGACTTTGCAAGGAAAGCATCCAAGCATGGAGGTGAAATGCAAATGCATCTACAGTCTATGGTGAATTTGTTAAGAGATGATGATGTTCTGAGACTGGTTGTTAAACTTGAGGGTGCTTCAAAAGACAGAGTTCGTTACTTGACAGTGGTGTCAGCTTTCAATGAAGATGATATTGAAGAAAGCATTGCAATGGGTGTTGATTGGGTTAATACAAGAGCTACTTGCACAATTGGAATGGTCCTACCTTTATGGAGAGATGCAAAAATTGAACTTGATGGTGATGGTGGTTTCAAACTTACAACCAATTATAAAAGTCATATTYTAAAGCCAGTTTCTGTTCAAACAATGTGGACTGCAGTCCAGTGGATTCACAGATGTTCTGAAAATGCAAGAAAAAACAACCAATTTCCTAATGGTCTGTCGCACCAGTGGTCTAACTTTTATTCCAGTCATATATCTTCTGACCAGGCATGCATCAATGAATGGCATGAGATGGAAGACATCAGTTCAAAGCTCATTCAGTTGCCTACTGGAATAACTCAAGAGGAAGAGCTGATGATGAAACTTATAAAGCACAGGTTAAAAGAAGTGATGATGAAAGTGGACTTAGAAGAAGTAACTAGCAGAATGATTCGTGAAAGCCTTGAAGATGAAATGCAAATGGATTTAAAACAGTACAATAAGTACATTGATGAAGAAATGTTAACTATCTTTGGACAAATGGACTCATCTTCACAAATTTATGACCATGTTTATTTGGGATCTGAATGGAATGCTTCAAATCTAGAAGAACTTAGAGAAAATGGGATTGGGTATATTTTGAATATCTCTAGAGAAATTGATAATTTCTTTTATGGAACTTTTGAATATCTAAACATAAGACTTTATGATGTAGAGGAATCAGATTTATTATCTCATTGGGAAAATACTTACAAGTTTATTAACAAAGCAAAAGAAAGAGGTGTAAACGTTCTTGTACATTGTAAGATGGGCATGAGTAGATCAGCATCAACGGTGATTGCTTATGGGATGAAAGAGTATGGCTTAAACTTACATGATACAATGAAGTATGTGAAGTCTAAACGATCCGTCATCAACCCAAATCCTGGTTTTTGGAAACAGCTGATTACTTATGAAGGCATTCTGAATTCGAGTAAACAGAGGTTCAATCCTGTATTCTCAGGACCAGGTCGAAGAAGAACAAGCTCAGATGATTTAGATGTTAGAAAAGGAGGAAAACGTCGCCGTAATCGTCGGAACCAAAAGTCGAAAACAGTCACAATTGGTGAGAAGTTATCGGTAGAGCCCATACTTGAAGATGCTCATTCAAGCACTTTGGAAAGAAGCAAGTTTGTTGTTGGTGAAGATGCTGATACCGAAGATCTAAGTGAAGACTTTGACACAGAGCAATCTTCTTTTATGGAAGGAACGTCGTCAACCGAAGATGTTTTACAAAAATGGGAAAGATCCTTATCAGAAAATAACGATGATCCGATGTCATCGAGTATTAATCATGACATAGATGAAGTTGGTGACACGGTGGGTGTTTTGGAAAAACCTAAAAGGAAAATGCAGTCAAATAAGGTCGCAGTGTTGCACCGTGCGCGTTCTGTTCCGTCACTTCATGCGAAGAACAGGCAATCTCCTGATGAAAGCGTTGATGTTGAAAAAACTGAGGAACTCCACCGATGCACTTCGCTGCATGAATTTCTAAGTGGCAAAGTACAAAAACTCAAAGAAGATTTTAAAGTGCAAAGCCTTGAGAGACAGGCGGATTTCCATGGCAACCTTGAAAAACGGAGTGCTAGTCACCCAACATCTCCAGTTGGGGAAGAAAATAAAGAAAAATTAAAACTACAGAGCACTTTGAGTGATCCAACATGTTTAATCTCAGATGACCCGGTTCATAAAGAATCAGAAACAGAAGACAATGGGAGTTCTCCAGACCAAACACACACTACAGTTGTCCATCGCGACGCTCAGGGTGTTGTAAAAAGCGGCACAGTAAAACGACAGTCAAAGAACTTTGAAGAAGGTAGAGTCAACCTTCCATGGGAGTGGGAAGAAGCACTAGATGTGCTAGAGAACAGTGAGCAACATACAGTTCAAGAAGACACACCTGATTCTCCATCATCGGTATCGGAGGAGCTGCCTCCTTCCGCCGAAGATGAACCCCCCATTGGTGTTGTAAAAATGCATGCTCAAAAGTTTCAGGGAACGGTGAATAATGACATCAAAAGCACGGACTCACAACAGGCACCAACATCGACAAATACGGAAGACATTCAAGAAAAGTTTCCCATGAAAGAAGACACGCAAGGAAGTAAAGAGTTGTTTGGAAAAGCTTTGAAGAACGTTAATGAAGATATGATGAAAGAAAAATCAAGACAAAAGATGGGGGCGAGTGGTATGAGCATTGATAGTGATAAAACAGAAAATGAAATTATCTCTACAACGATTGAAAGTCAAGAGTCGGAAATTGACAATAACGAGTTTTTGTGTGATCGTGTTCAAAGCGAGGACCCCCTTCCAGGAACTGTAAGGAAACACACACAGGCAATCGAGGATAAATATCAACAACTTGCAAAGGCTTCTTCAGTGGAAGGCTTTGAGGACATACCGAGTAAAAGAACAGAAAGTGAATATGAAGCAGAATCCTCAACAAAAAAAGTACATCGAAATACCGAAATCTGTAAAAGAGAAGCTGTTCTAGACGAACGAAAGGACACTGAGTCATTTGATGTCGACGTCTTACTTCAAAGAGTAAATGAAGATATGCAGAGAGAACGAGAAGAACGTCGAGAAGCCGGTGCTTTCAAAGATTACTGTAGTTTTTCCTTAGAGGAAAGCATGTTTGAGGACATTAAACCACAAACTGAGAATTCATGTGTACTGCAGGAGCAAGATGACGAAAGTGAAATTCCAAGACCAGGAACTGTTAGACGTAATACAGAACTATTACTTGGAAAAGGCATTGTCTCCCAGGATAAAACAGAGAAGGCTCCGTCAAAGGACTATTCTGTTATTGATGTCGTGGATGATGTAAATCCTACAGGAAAACCTCCTCATAAAAAGACTTCAAGTCCTGAGAAAGGTAAAGAAGCTGACAAGACAAGTGGTGAAACCGATGCAGCAGGAAAAGGACTCGTTAAGAGAAATACACTTGTGTATGAAGGTGTATTACCATTCCTTGTCGGTGATGAGACAAGGGATTCAAAAGACGACACTGAAGTCAGTCCAAATCAAGAAAAAGAGACAGAGTGCGACGTGGAAACCTTACATCATAGCGTAGAGGAGGACATAGGTGGAGAGTCTTACTGTGGAACTGTTAAGAGAAATACATTGATATTCGAAGGACGTGACTCCGTTGAAGTAGAACCCGCTTCAACTGTTACAGATTATGTCCAGTTGGAAGTTGTCGACCGTTCTGAGGATGATGATGATGAAGCCAAAGTTGAGAAAGACGCACATGATGCAGTGGACACCTCTAGTGTTGTTAATGTGAAGTTACATCTTAAGCTTTTAGAAGAAGTCATTCGAAAAGCTAACGAGCGTGAAACCCACAAACAACGAACAACAAAAGCACTTGCAGATTTAGAAGACAAAAGAAAGCAAATCGAAATGGAACAAAATAAATTAGACATTGAAAACTCTAAAGAACATGATCTAAAACGTGATTCTGCCAACGCGGAATCTGATTTTACGACTGATTATGGTGCCCAGGGCGAAACGTCACCTCCAGATGAAAATCTGGAAAATTCGAGCAAAGAGAATTCAGAGAGTGAAAGAACTCCCTGTGTTGGAAATGTTCGAATACGTACTCTCCAGTTAGAGGAGCGTATACAAGGACAGCCTCTCCGAAGACATGGGTCTATGCCGAGAACAACTCGACCTATTGATCGTCCAGTAATTCGGCAACGATCAATGTCCGACCTTCAAGTCGGAAGCAAGCCGTCGACCTCTCGTGAGCCGATATCATCGAGTAGTCCATTAGAACGCGACGGGCAAACAAAGAAGAATAAAGATACTAAAGAAGTGAAAGTCCCACGTCAAGGAGAACTTCCTGATAACGATAGAGACTCTGAGAAATTAAGTGATAATATGTCCGAAAAGTCAGACAAAACTGATGATGATTTAAAGTCAGAGGACATTTTTGACCTGCAAAGTACAAAGATTGAACTATCTAATTCAAAACAAAGTTGTCAAATACAGGATCAAGACAACAGAGACATACATACAATTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I76	Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1
Q5SW75	Protein phosphatase Slingshot homolog 2 OS=Mus musculus OX=10090 GN=Ssh2 PE=1 SV=2
Q8WYL5	Protein phosphatase Slingshot homolog 1 OS=Homo sapiens OX=9606 GN=SSH1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ07489.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

61.8Max TPM

35.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	31.23	53.81
whole animal · symbiotic	36	36	40.01	61.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.81
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.89
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.14
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.64
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.56
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.51
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.49
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.07
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.97
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.38
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.44
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.24
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.57
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.27
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.64
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.74
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.64
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.51
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.71
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.53
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.09
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.73
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.45
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.15
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.05
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.42
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.47
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.16
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.04
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.72
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.47
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.00
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.86
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.26
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.04
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.45
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.78
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.57
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.83
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.47
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.05
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.89
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.78
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.77
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.02
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.15
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.33
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.05
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.29
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.04
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.62
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.44
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.97
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.30
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.51
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.82
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.67
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.58
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.04
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.87
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.80
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.32
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.23
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.13
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.99
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.93
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.75
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.98
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.72
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.06
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.03
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.73

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.