Gene detail

Detailed information of KXJ07907.1 in Exaiptasia diaphana

Genomic Location: LJWW01000611.1:36076...39597
NR annotation: XP_020911969.1, 60S acidic ribosomal protein P1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56K14	Large ribosomal subunit protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1
P05386	Large ribosomal subunit protein P1 OS=Homo sapiens OX=9606 GN=RPLP1 PE=1 SV=1
P19944	Large ribosomal subunit protein P1 OS=Rattus norvegicus OX=10116 GN=Rplp1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428 all species →	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027534 all species →	Family	Large ribosomal subunit protein P1/P2	Interproscan
IPR038716 all species →	Homologous_superfamily	Large ribosomal subunit protein P1/P2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45696 all species →	60S ACIDIC RIBOSOMAL PROTEIN P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030295 all species →	Molecular Function	protein kinase activator activity	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02942	RP-LP1, RPLP1; large subunit ribosomal protein LP1	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ07907.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

3,750.5Max TPM

2,506.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	2,611.38	3,507.71
whole animal · symbiotic	36	36	2,400.93	3,750.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,507.71
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,450.51
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,427.80
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,402.69
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,370.05
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,338.29
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,331.92
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,879.18
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,874.67
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,845.72
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,833.68
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,827.33
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,798.30
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,718.39
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,679.67
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,676.33
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,660.62
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,647.18
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,623.77
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,506.55
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,464.98
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,451.74
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,450.51
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,430.68
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,405.13
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,343.07
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,324.28
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,295.90
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,287.94
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,284.00
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,847.30
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,819.76
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,807.53
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,806.52
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,798.83
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,791.05
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,750.54
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,048.82
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,027.66
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,009.13
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,006.00
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,955.64
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,841.96
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,803.92
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,670.49
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,656.33
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,649.71
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,633.53
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,628.08
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,507.49
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,484.02
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,472.61
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,461.34
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,438.56
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,332.25
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,331.11
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,293.79
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,282.17
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,272.58
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,272.14
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,216.78
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,991.98
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,984.65
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,983.80
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,981.48
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,954.10
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,777.27
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,769.33
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,764.48
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,734.76
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,733.30
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,711.65

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.