Gene detail

Detailed information of KXJ07967.1 in Exaiptasia diaphana

Genomic Location: LJWW01000604.1:1...16806
NR annotation: KXJ07967.1, Suppressor of hairless protein-like [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ07967.1

ATGGGAAACCAGAACTGTAAGGATTGTTCAAACTCTATCTTGTTTTCCGAAGAAGATGTTGATGAAATGAAAGAATGGATGGAATATTCAAAGACAATTCACTGGCGTTATCCTTCATCATGCTTACCAGGGACTGAACTCAAACATGTACAGCCTGACTACAAAACAGAAACTGAAAAAGAGCAAAATAACGTCCTTAAGAGAAGTGTTTTATTAGTGAACAGTGATTATAGAATGAACAGAGGCTCAGTAAGAAAATCATCGAAGAAATCCATGAAGGAAGAAATATTCCTTGAAGAGAGCACAGTTAATAACAACAATGTTATAAAAACAAAGCAAATTGAAGAGATGGAGGGAAGCGAGGAGACACAAAGAATGGATTGTGACAAGGCTAARAAGACAGGGTTCCCAACTGGTCGAGTGTACATCGGCATGTCACATGACTCAATCACTCGTAGGCTGAAGGTGGCAATAATCAAAGCCAAAAACCTGAGCTGTAAACAAGATGGAAGGAAAGACATGTGTGGCATTAATTGCTCAGCTTCATTTATCACGATTTCTTTAGTAGAAGGTGATCACGTGATCGATACCTATTCCACGGCGATAAAAAACGGTTATTCTGAAGTATTATACTACGAGAGCTATGCCTTTAACCTAAACGAACTCAACCTGCGAGGACTGTCGGTTGTCATTACAGCAAAACACAGTAACCAACAACGTTTTCTTAAACACTGCCATGTCATTGGTTCCGTGGTGCTGCATGGACTTCTTGTTCGGGACGACGATGCGTTTATGGACAGCCATCTTGTTGAAGTAACGACACGACCTCGACAAACATTACGTTTATCTCTAATTACTAAATTGGCACAAGAGGACAAGGATTTTTGTGGATTTGCAGGTTATAACTTGGAATCAATGCGGCGGACGGCGTTGAGTTCTCCTCTACCTCGGCATAGTTTCAAACGTTTTCATCTTGATTCGAGCTACAGTAACGATCTAGCGTCATCTCAAGCAAACGGTTCTTTAGATTCTCCTATATATCATCCTCATATCGGTACAAATCTACCAGGATCATTCCAGAATGTAACGGGGGAGCCTTGTGATCATAGGGGACCCTACCACAGAGTAGGGGGGTACACACCCAAACATGGGCACCCAACGATGTCAGGCCCGGAACCCAGATCAATGCCACCTATTAACATGACGGCAGGTCAACCTAGTCCACCAACAACACCATCACCAACACCTGATGATGACGATAGACTTCACAAGGAAAACCCTTCAAGGTTTCCACTCTGTCCTTATGTCCCAGCTAAACTAACCAAGACTGCAATGGACCGGTATCTCAATGATGTTGTCAAACGCAATGGTCACCAGACAGTTGTTATATTCCATGCCAAGGTCGCACAGAAGTCTTATGGAAATGAAAAAAGGTTTTTCTGTCCCCCACCCTGTGTGTACCTGTTTGGTAAAGGCTGGCGGAACAGACAACGACTTTTACAGCAAGCAGGGGAGGATGATGGGAAGAAGCAGCCGATTGCATTCATTGGTATTGGAAACAACAATGAACAAGAAATGCAACAACTCCTTATAGAAGAAAAGGGCTATGGTGCTGCAAAAACACTCTTCATATCAGACTCAGATAAACGAAAACACTTTGAATTATCAGTCAAGCTTCTCTACCCTAATGGAGATCATGTTGGTATTTTCAACTCTAAACGAATTAAGGTCATATCAAAACCTTCCAAGAAAAAACAGTCTTTAAAAAATGCTGATTTATGTATCCAGTCTGGATCAACAGTTGCGTTATTCAACAGACTCAGATCACAAACAGTCAGCACAAGGTATCTTCATGTTGAAAATGGAAACTTTCATGCTAGCAGCCAACAATGGGGAGCATTCACTATTCATTTATTGGATGATGAAGAAAGTGAAAGTGAAGAGTTTACAGTTCGAGAGGGCTACATACATTATGGTTCAACAGTTAAACTAGTTTGCTCAGTAACTGGAATGGCTTTACCAAGACTGGTTTTACGAAAAGTTGACAAGCAAACAGCACTACTAGATGCAGATGACCCTGTTTCACAGCTTCACAAAGTTGCATTCTACATGAAAGACACTGAACGAATGTATTTATGTTTGTCACAGGAAAGAATAATTCAATTCCAGGCAACACCATGTCCCAAAGAGGCCAACAAAGATATGATAAATGATGGTGCTTCCTGGACAATAATAAGCACAGATAAGGCAGAGTGTAGTTTCTATGAAGGAATGGGACCAGTTCGTTCACCAGTAACACCTGTTCCTATCGTAAACCACCTACAGCTCAATGGTGGGGGAGATGTTGCAATGTTGGAATTAACAGGGGAAAATTTTACTGCAAATCTGAAAGTTTGGTTTGGGGATGTTGAAGCTGAGACTATGTACAGATGTGGCGAGAGTCTACTATGTGTAGTTCCAGACATATCTGCCATTCGTGGAGGCTGGAGATTTGTACGTCAACCTACTGAAGTTGCTGTCAGTCTCGTGAGATGTGATGGTGTTATATATCCTACAGGACTAACGTTCACATATACGCCAGAACCAGTAGAACGACCTGCTTTACCAGTCGCAGAATCAGTTATCCGAGGAGAGATATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91880	Suppressor of hairless protein homolog OS=Xenopus laevis OX=8355 GN=rbpj PE=1 SV=1
Q06330	Recombining binding protein suppressor of hairless OS=Homo sapiens OX=9606 GN=RBPJ PE=1 SV=3
Q5RFK6	Recombining binding protein suppressor of hairless OS=Pongo abelii OX=9601 GN=RBPJ PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003006 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09270 all species →	BTD	Beta-trefoil DNA-binding domain	Domain	Interproscan
PF09271 all species →	LAG1-DNAbind	LAG1, DNA binding	Domain	Interproscan
PF20144 all species →	TIG_SUH	TIG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015350 all species →	Domain	Beta-trefoil DNA-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036358 all species →	Homologous_superfamily	Beta-trefoil domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015351 all species →	Domain	RBP-J/Cbf11/Cbf12, DNA binding	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR040159 all species →	Family	Suppressor of hairless-like	Interproscan
IPR038007 all species →	Domain	RBP-Jkappa, IPT domain	Interproscan
IPR037095 all species →	Homologous_superfamily	RBP-J/Cbf11, DNA binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10665 all species →	RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06053	RBPSUH, RBPJK; recombining binding protein suppressor of hairless	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ07967.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

83.9Max TPM

27.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	25.77	56.49
whole animal · symbiotic	36	33	28.54	83.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.49
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.25
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.14
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.51
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.22
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.06
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.66
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.11
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.52
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.36
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.31
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.16
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.76
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.63
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.79
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.41
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.33
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.33
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.00
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.68
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.28
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.06
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.79
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.58
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.70
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.65
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.57
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.45
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.11
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.96
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.67
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.21
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.07
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.69
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.21
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.94
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.50
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.32
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.77
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.31
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.00
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.21
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.20
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.92
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.32
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.56
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.01
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.38
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.04
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.64
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.07
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.28
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.81
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.59
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.27
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.47
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.46
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.06
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.63
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.42
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.61
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.05
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.95
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.89
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.86
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.66
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.94
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.15
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.