Gene detail

Detailed information of KXJ08073.1 in Exaiptasia diaphana

Genomic Location: LJWW01000592.1:109...7646
NR annotation: XP_020905284.1, integrator complex subunit 5 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ08073.1

ATGGCGGACGCAAGTGGAGGAGAGACACAAGAAAAGGATATTTTGGAGAATTTGAACGCCTTTCTGTCAGGGTGTGGGGAGAGCAAGCCGCCTTCAACTGTGAGCAGCATTGATAAGATACAATGCGCTATAGTTTTGCTTCAGTCCCTTCCGTGTGCCAGGCATGCTGTATTGGAGCAGCTTTGTGGAGCGTTCCACGAATCGATGAACAAATTTATGGTCGAAATGGAAAGAAAAGCACAACTTGGAGGGTCTGGGAGTTTACCAGAAGTTGTAGATGCAGACCTTGACAATGCTTTACATAGTATCTGTGATGTTGTGAGTGAATTTGTCAATACCAATCCATCATCATGGGCTCTACTTATTTGTGAGTGGTGCTTGAACCTGCTTGGTGACTTGATATCCAAATTCGACCAAAAAAGAGGTGTCAGTCTCACATTGTCATTCAGTGAGGGCTTTCATAAGTGGATGCTGTTTCCTCCAGTTCARATGTTGATGGGAATAGGCACATTGTGTTGCTCAAAACTTGTGGTTACTGATCCAGATAACTGTATGGAAGCACTATTRCAAATCTCCATGAAGTACTCACCACACCTTGATTGGGTTGTTGCACATATTGTATCCCACTTTCACGATATTATTATCAAGAAACTTCTAAACACTGCCTTGAGAGACTATGCTAAGACTCTGGGAGATGAGAGTGAAGAAAAGTCTTTATTAGTCTCAACTATTGTCCAAGTCTTGGGGTATTTGTCTATCCAATTTGCAGCTGAAATTAAGACAAATCTTTTGGCTTTGTTTCATGCAAGTCTTGCACAAGAAACAAAGGGTGACAAGGACAAAAGAGAACAGCTAGCCACAATACCATTTCTTCTACACATTGCATCTCTGTCTCCTGAGCTGCTCAAGGGAACTTTAACTGACTTTGTGGAAGTCTTATCTCCTGGTGTACTAGTACAACTCTATGACCAGTCAATTCTCAGGTCAACTGTTTATCATAAGCAGTCAAGCTTAATCCCAGCACTTGTGGATATTATAACCAACATAGAAACAGGAGCTTACACTATATTCTGTTTTATACTGGATAACTGTACCCCTCAAGAAGACCAAGATAAGATGGACATACCTACTGCCAATCTTGAAGTTCAAAAAGCATGTTCCTATGTAATGGAAGGTTTATTGATGAAGCTACAGGATGTGATCAGCCAGAGACATAAACTKTTTACTCAAAAAGCWGCCATTGCACCACTTGTCTCCACYTCTACAGAGAGTGCATTTTTACTGGAGATGTCTTCATATGCTGTTCAACTTACTAAACTATTGCTCCAAGCCCAGGGCAAAAGGCTTGGATGGATTTTCCGTATGCTGGTTCTTGTTTGTGTCCACAGTGGAGAAACCACAGCAATACAGATTTTGAATTTCATCTTARCCCATAGTAAAACCAATGAATCTTTGAATCTTTTTGTACAAATGCAATGTGAAGTAGAGTTTTATTATCCCCATGTGTTGCAAGAAACTACTAAGAAATGCTTSATGTCAGTGAACTGTTCCAGTGCAACTGCCAAGCCTTTGATGGTGAAGAATATTCTTGACAATATACATCAGCTTATCTTAGCAGAGAAAAATGGAGTATTCCAAGCTCCAAGGTGTCAAATCACAGATATGCTACTAGTACACACTGCAAACCTAATCCCTCTCCTTAGCCACTCCAACAATCCCGTAGCGTCCAAAACACTGTCACTGTTACTAGCATATGAACAGGACATCTTCCCTACAGTATCGTTGAAAAACAACATTTGCAGAAATGTTACTTCATTTCTGTTCAAACAGCTCAGAGAATTGGTGGAAGTAGAAACATGTTCTTCAGATATAATGGAAAGAATCAAACTTTGCACAAAGATGCTAACAAGATTATCAAAAGATGAAGACTGTAGATTGTTACTGATAAGAATTCTAGTTGAAAGTACTCTTGAAAAGGAGAATATCCAGTTGTTGGGTGCAAAGCCACAAGAAAAAGACAAAAGCAAAATWCAGCAAAGTAATCAAGCCTCGCTRCTYGAGTACAACCAGAATCCCCATATTTCCTCACGACTAGCGCTCAGTCCCTCATCACTGTTTTTTACTGGGGTGATTGGGAACAAGAACAGAAATGGAATTCCTAAAAAACAAGATGATAAACCAAGTCAGGCATGGTTACCAAGCAGTCAGGTCTACATGGATACGTTGGTAACCCTTTGTAGGAGTGACACTGCTGAAGAAAGTCATATTATAACATCAAACACAGATCAAGTGGCTTTGCTTCTGATGGAAATGGTTTGTCCTGAGATGGTGCTGTATACTGGAGAATGGCCAGATGAAGAAACACTTAAGTTCAATGTTGAAAGGGATCTTAGAATACGAAACACGTTTGACAGGAACCCAGTCTTATGGTGGCTACTCCTGCTTGTGTCTCAAGGAGCGTCATCGTTGTGTAAATGTGCTCCATTGTTGTCGAGCTTACTTGCTACCGTGATGTCCAGCTGGGAAGTATGTCGTGACAAAATGGTAACGCAATCTTCAGAACTCTTCCGTGACACGCAGTACATTATGCAAGTGATGGTGGAGAGTGACTGGCTGCCCGCGCCTCTGTCACGCATTGGTGGCGTTCTTCATCTTTTATCCCCCAAAGAAATATTCGCAGTTATCAATACGATGTGGAAAGTACTGAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004015 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14838 all species →	INTS5_C	Integrator complex subunit 5 C-terminus	Family	Interproscan
PF14837 all species →	INTS5_N	Integrator complex subunit 5 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029444 all species →	Domain	Integrator complex subunit 5, C-terminal	Interproscan
IPR040316 all species →	Family	Integrator complex subunit 5	Interproscan
IPR029445 all species →	Domain	Integrator complex subunit 5, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31697 all species →	INTEGRATOR COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13142	INTS5; integrator complex subunit 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ08073.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

29.1Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	6.19	17.85
whole animal · symbiotic	36	32	7.65	29.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.85
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.44
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.01
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.76
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.15
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.14
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.02
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.83
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.71
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.34
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.89
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.81
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.67
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.67
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.59
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.31
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.29
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.24
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.16
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.12
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.90
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.68
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.58
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.54
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.47
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.22
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.10
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.03
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.00
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.87
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.74
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.47
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.38
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.11
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.98
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.12
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.28
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.11
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.10
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.65
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.34
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.22
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.21
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.95
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.84
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.34
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.13
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.77
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.68
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.63
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.22
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.21
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.17
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.08
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.02
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.79
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.65
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.28
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.96
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.93
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.73
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.70
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.58
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.41
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.17
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.