Gene detail

Detailed information of KXJ08074.1 in Exaiptasia diaphana

Genomic Location: LJWW01000592.1:51446...61201
NR annotation: KXJ08074.1, Retrovirus-related Pol polyprotein from transposon opus [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ08074.1

ATGCCAGAAACCTCGGAGCAAAGTGGAGCACCTACACCGATGATTAATCCTGTTTCATACCAATTTACTCCTCCAGAGGAATTCGACTTCTCAAAGCCAAACGAGTGGGGAAAATGGATCAAGCGATTCGAGCGCTTCCGCTCTGCATCTGGCTTGAGTAAAAGGGATGAAGAAAGTCAAGTAAATACRCTATTGTATTCCATGGGAAGCAAAAGTGATGATATACTGGCGACATTTGGTCTTTCGAACGACGAATCCAAGAAATATAATGAATATAGTGACCGTATCGTGAAAAAGCCCGGCATTAACAGCGTAAGACAGAGTGAGTCTGTGAAAAGCCAACAATCAGTAGTCRGAGGTCAAGAGGATGGAAGTCAACCTGCAAAAGTGGATAGAATCCACAAGTCTAAGTCACAGAAATCTCAAAATCACAGCCAACATCTGCATGGAAAAGCCTCTAAACAACCAGCAAACCCAAATTATCTAACCAATGATGTTTGCAAGCGATGTGGGAAAAGCCCATCCCACAAACGAACACAGTGTCCTGCAAGAGAAGCAACTTGCCGAAAGTGCAAAAAGAAGGGTCACTTCCAAGCTGTATGCTTTAGTGGAAAAGTAAATGCAGTTGAAGAGGAGGATGATGACAGCGATGAGTGCTTTCTTGGTACTCTGAGTGCTGGAAAAATTGATAATGTGCAAGTAGACCCCTGGAAGACTAATGTCTCTGTAAACGGCAATAACATTGCATTCAAACTCGACAYCGGAGCTGATGTTTCTGTGGTGCCTGACTCTATTTTGCCTAAACTAAATGCTACTCTTGGTCACACAAAGAGGACATTGACAGGAGCTGATGGTTCTAAGCTCAACGTCAGTGGGTCAATCTCTGCTACATTGAAAGCTAATCACCTTGAAACAAAACAAGAAATCTACGTGGTCAAGAATTTGAAGTATCCATTGTTGGGTAGACCTGCCATARAAGCTCTGCAACTTGTTAAAGTTATCCATTCTGTGGAAGAGTCAAACAAAGAATCTGTACATGCAAGACATCCAAAGCTATTCAAAGGCCTAGGAAAGCTCGATGGGCACTACAAAATTGAATTAAAAGATAATGCTGTACCTTACGCTGTGAACACGCCACGACGAATTGCGAAGCCACTCTTACCTAAAGTTAAAAAGAAGCTTGAAGAGCTAGAACAGCAAGGTGTAATATCGAAGGTAGATCAACCTACAGATTGGTGTGCGCCTATTGTAACAGTTCCAAAAAGCAACGGCGATGTTAGAGTATGTGTTGACCTGACCCGACTCAACGAGCAAGTTAGACGCGAACGACTGATGCTCCCATCTGTCGACGATGTGCTCTCTCAGTTAAGCGGTGCTGCAGTATTTTCAAAGTTAGATGCTAACTCTGGCTTCTATCAARTCAAGCTTGCGCCGGAATCAACCCTGTTGACAACATTCATCACACCGTTCGGGCGGTTTTGCTATAATAGGCTACCGTTCGGAATTACCTCTGCACCAGAGTATTTTCAAAAGAGAATGCAATCTGTACTTGCTGGAGTAGAAGGGACAGTCAATATGATTGACGACACACTTGTCTATGGGAGAAAYCAAGCGGAGCATGACGAGCGCCTTGAAAAAGTGCTGAGCAGACTTGAGGAAGCAGGAGTCACCCTCAATGCTGAGAAATGTGAGTACTCGAAGTCAAGCTTAACATTCCTTGGTCATGTGGTAGATGCGTCGGGTATACGTCCAGACCCTGCGAAGGTAAAGGCAATCCAGGACATGAATGACCCTACCAATGTAACGGAGCTAAGGCGGTTCCTAGGAATGACGAATCAGCTCGGAAAGTTTTCTGATAAAATAGCCGAAGTCTCAAAGCCTCTGAGAGATCTACTAAGCTCAAAGAATTCCTGGGTATGGGAAAGCCCTCAGAAAGAAGCATTCAATGCCCTCAAGAAACTTCTCTGTAGCGAAGAAGTGGTGCTAGCTCACTACGACCTGGAAGCGGAAACCAGAGTCTCAGCTGATGCATCTTCGTACGGCTTGGGTGCTGTCCTCTTACAAAAGCAGAAAGACCAGAGCTGGAGACCCGTGGCTTATCAATCGAGATCCCTAACTGCATGTGAGCAAAGGTACGCCCAGATCGAAAAAGAAGCCCTTGCCACGACGTGGGCATGTGAGCGCTTCAACAGCTACTTGCTCGGGAAAACCTTTGAAGTACAGACGGATCACAAGCCTCTGATTTACCTCTTAAGCTCTAAGAAGGATCTAGACTGCTTACCACCTCGTATTCAACGCTTCAGAATGCGTCTGATGAAATATAGTTTCAGTATTGTTCATGTACCTGCCATACTGATCTCTGCAGTAGTTTATAGCTATGCAGAAAACTCCACTAATTCCAACTTAACAAAATGCCTGTCAAGTTTAAATGAAGTTGAACGTGAACTTTCTTCTAAAATCCCACCATTGAAAGGATTAACATCAGACAATTGGAGGAATATTTCAAGAGCCCTATTCCCAGCACTCACTCAGAATCAACCGTCGTTGTATATCAAAGTAACCCTACGAATCATCAGTAATCAGACTGTTTACGAAGTCAAAAAGTTTACTTGGGCTGAAAGTTGTGCCTTTGTAACCGACGTCTTTATTGACGCAGCGACAGTATTTTCTTTGGGAACACTATGGCCACAGCGAAGGCAAGCTGAATTGGACTTGACAGTGCATCGATTGTGCAACAAGTCACAAATATTGAAGGAGAATGGTTTCAAAGATGAAAACGAAGCGTGGAGATACGTTCTTTTAACGTTACAAGATATTGCCATACTTCCAAATTTGTCTGACCCRCGAGTCAACACAGCMCAATGTGTGGTAGTTGGTCATGAAGGAGATGTKGAACAACCAATTAACATGCATAGTCTTAAGTTTGTCTTGTTTCATATTGATGGTAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ08074.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ08074.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

37.0Max TPM

11.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	10.19	29.56
whole animal · symbiotic	36	33	13.25	36.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.56
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.12
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.48
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.70
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.45
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.66
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.88
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.77
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.75
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.45
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.29
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.04
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.91
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.79
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.48
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.23
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.14
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.13
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.06
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.02
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.01
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.99
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.89
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.74
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.69
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.63
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.59
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.16
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.15
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.75
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.70
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.50
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.09
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.01
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.98
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.62
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.67
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.17
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.01
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.84
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.61
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.60
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.59
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.59
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.24
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.15
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.00
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.93
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.90
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.56
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.53
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.33
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.27
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.23
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.62
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.65
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.62
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.62
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.61
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.30
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.26
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.03
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.92
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.35
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.52
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.42
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.40
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.