Gene detail

Detailed information of KXJ09220.1 in Exaiptasia diaphana

Genomic Location: LJWW01000495.1:115066...116826
NR annotation: KXJ09220.1, E3 ubiquitin-protein ligase MSL2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1D5NVS8	E3 ubiquitin-protein ligase MSL2 OS=Gallus gallus OX=9031 GN=MSL2 PE=3 SV=1
Q9HCI7	E3 ubiquitin-protein ligase MSL2 OS=Homo sapiens OX=9606 GN=MSL2 PE=1 SV=2
Q69ZF8	E3 ubiquitin-protein ligase MSL2 OS=Mus musculus OX=10090 GN=Msl2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009707 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16685 all species →	zf-RING_10	zinc RING finger of MSL2	Domain	Interproscan
PF16682 all species →	MSL2-CXC	CXC domain of E3 ubiquitin-protein ligase MSL2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032043 all species →	Domain	E3 ubiquitin-protein ligase Msl2, zinc RING finger	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR037922 all species →	Family	E3 ubiquitin-protein ligase MSL2	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR032049 all species →	Domain	E3 ubiquitin-protein ligase Msl2, CXC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16048 all species →	MSL2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0043984 all species →	Biological Process	obsolete histone H4-K16 acetylation	Interproscan
GO:0072487 all species →	Cellular Component	MSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13164	MSL2; male-specific lethal 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ09220.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

62TPM > 0

2Conditions

21.7Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	9.05	15.21
whole animal · symbiotic	36	31	9.64	21.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.21
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.08
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.79
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.10
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.19
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.08
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.96
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.29
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.15
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.07
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.99
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.66
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.18
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.81
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.80
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.39
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.08
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.71
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.25
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.14
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.07
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.87
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.75
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.21
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.05
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.70
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.59
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.35
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.89
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.82
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.62
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.71
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.29
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.17
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.36
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.82
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.01
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.98
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.03
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.65
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.59
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.22
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.90
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.68
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.58
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.56
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.41
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.31
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.17
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.16
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.11
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.81
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.72
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.72
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.62
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.10
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.79
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.38
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.74
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.68
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.62
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.29
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.