Gene detail

Detailed information of KXJ09271.1 in Exaiptasia diaphana

Genomic Location: LJWW01000491.1:60116...91677
NR annotation: XP_020909458.2, high-affinity choline transporter 1 isoform X1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VE46	High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
O02228	High-affinity choline transporter 1 OS=Caenorhabditis elegans OX=6239 GN=cho-1 PE=2 SV=2
Q9GZV3	High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001055 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR052244 all species →	Family	High-affinity choline transporter	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45897 all species →	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005307 all species →	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008292 all species →	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871 all species →	Biological Process	choline transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14387	SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ09271.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

103.5Max TPM

38.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	33.16	49.26
whole animal · symbiotic	36	34	43.24	103.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.26
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.23
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.09
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.99
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.76
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.27
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.28
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.72
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.57
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.94
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.72
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.47
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.76
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.51
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.80
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.63
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.21
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.99
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.98
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.81
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.26
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.77
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.39
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.20
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.88
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.14
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.77
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.65
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.52
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.39
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.00
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.59
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.32
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	103.45
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.81
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.49
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.38
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.99
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.34
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.40
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.31
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.91
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.49
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.62
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.27
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.91
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.73
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.61
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.27
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.09
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.14
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.03
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.18
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.08
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.49
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.47
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.22
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.22
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.71
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.21
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.62
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.21
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.13
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.90
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.21
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.00
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.70
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.