Gene detail

Detailed information of KXJ09403.1 in Exaiptasia diaphana

Genomic Location: LJWW01000482.1:136306...142716
NR annotation: XP_020909112.1, ornithine aminotransferase, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZCF5	Ornithine aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=OAT PE=2 SV=1
P04181	Ornithine aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=OAT PE=1 SV=1
P29758	Ornithine aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Oat PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050103 all species →	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR010164 all species →	Family	Ornithine aminotransferase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11986 all species →	AMINOTRANSFERASE CLASS III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004587 all species →	Molecular Function	ornithine aminotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010121 all species →	Biological Process	arginine catabolic process to proline via ornithine	Interproscan
GO:0019544 all species →	Biological Process	arginine catabolic process to glutamate	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00819	rocD, OAT; ornithine--oxo-acid transaminase	EC:2.6.1.13	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ09403.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

558.3Max TPM

318.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	330.69	558.26
whole animal · symbiotic	36	36	306.50	434.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	558.26
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	475.33
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	465.35
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	463.40
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	458.02
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	451.92
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	447.57
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	438.14
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	425.05
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	424.55
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	415.46
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	405.84
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	355.91
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	341.71
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	337.97
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	334.91
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	321.44
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	317.03
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	309.14
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	301.41
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	300.10
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	293.89
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	292.97
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	282.35
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	263.18
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	258.17
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	255.35
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	253.35
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	248.55
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	246.37
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	210.21
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	195.81
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	194.26
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	192.93
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	186.82
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	182.12
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	434.38
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	427.68
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	420.90
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	420.70
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	416.98
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	416.46
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	407.33
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	375.25
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	371.90
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	369.33
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	365.75
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	363.07
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	361.74
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	360.56
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	351.91
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	351.16
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	344.62
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	343.17
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	341.50
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	256.97
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	252.18
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	247.64
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	245.95
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	245.58
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	242.39
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	240.06
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	234.15
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	230.52
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	223.26
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	206.35
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	206.23
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	204.97
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	200.91
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	190.25
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	190.20
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.06

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.