Gene detail

Detailed information of KXJ09486.1 in Exaiptasia diaphana

Genomic Location: LJWW01000476.1:120520...125876
NR annotation: XP_020908981.1, zinc transporter ZIP13 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AW42	Zinc transporter ZIP13 OS=Danio rerio OX=7955 GN=slc39a13 PE=2 SV=1
Q9VAF0	Zinc transporter ZIP13 homolog OS=Drosophila melanogaster OX=7227 GN=Zip99C PE=2 SV=1
Q5ZI20	Zinc transporter ZIP13 OS=Gallus gallus OX=9031 GN=SLC39A13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003689 all species →	Family	Zinc/iron permease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16950 all species →	ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14719	SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ09486.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

350.3Max TPM

176.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	166.75	350.27
whole animal · symbiotic	36	36	185.52	258.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	350.27
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	233.49
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	197.90
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	194.28
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	189.26
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	186.74
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	183.99
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	182.83
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	176.08
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	174.61
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	173.90
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.04
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.95
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.89
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.10
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	167.63
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	165.67
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	165.27
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.71
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.28
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.46
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.33
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.05
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.61
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.56
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	145.52
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	144.15
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.63
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.40
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.36
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	136.12
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	134.59
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	132.17
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	131.90
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	127.95
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	118.27
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	258.91
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	223.68
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	211.59
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	209.19
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	203.45
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	202.40
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	198.33
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	198.09
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	197.55
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	197.01
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	195.31
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	192.71
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	192.01
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	191.69
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	191.12
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	190.47
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	189.69
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	186.37
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	183.72
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	182.93
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	182.73
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	182.17
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	181.47
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	180.16
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	178.54
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	177.68
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	175.02
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	174.69
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	173.46
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	168.49
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	164.36
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	163.34
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.29
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.05
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	144.80
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	121.07

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.