Gene detail

Detailed information of KXJ09892.1 in Exaiptasia diaphana

Genomic Location: LJWW01000446.1:52865...57525
NR annotation: XP_020908270.1, lysosomal thioesterase PPT2-A [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCJ9	Lysosomal thioesterase PPT2-A OS=Xenopus laevis OX=8355 GN=ppt2-a PE=2 SV=1
O70489	Lysosomal thioesterase PPT2 OS=Rattus norvegicus OX=10116 GN=Ppt2 PE=2 SV=1
Q9UMR5	Lysosomal thioesterase PPT2 OS=Homo sapiens OX=9606 GN=PPT2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004209 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02089 all species →	Palm_thioest	Palmitoyl protein thioesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11247 all species →	PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0016790 all species →	Molecular Function	thiolester hydrolase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01074	PPT; palmitoyl-protein thioesterase	EC:3.1.2.22	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ09892.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

79.6Max TPM

22.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	14.38	29.84
whole animal · symbiotic	36	33	30.38	79.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.84
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.46
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.67
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.13
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.45
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.89
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.62
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.07
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.03
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.97
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.96
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.57
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.32
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.17
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.85
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.38
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.35
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.28
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.92
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.74
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.47
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.15
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.75
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.40
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.62
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.01
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.87
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.64
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.79
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.39
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.89
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.76
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.19
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.61
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.16
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.21
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.31
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.03
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.86
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.79
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.73
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.37
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.12
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.56
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.17
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.34
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.18
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.95
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.06
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.54
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.50
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.26
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.12
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.77
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.45
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.97
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.56
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.40
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.31
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.16
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.73
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.71
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.61
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.58
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.13
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.29
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.