Gene detail

Detailed information of KXJ12876.1 in Exaiptasia diaphana

Genomic Location: LJWW01000305.1:10256...21495
NR annotation: KXJ12876.1, Fibrillin-2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ12876.1

ATGAAGTTATTATATGTCTTTTTCTTGGTTTTATCTGCTGTATTCTCTGCAAAAGGAGTTCAACATGGAACTCTTCGCATCGGCCAGACAAACCCTGATAATTACTACTGCGATACTATCACCTTCCCAACAGCCTTCACGGGAGTTGATCCTGTCAAAGTCTTTACGTCAGTTGGTTTTGGCACGAGCTCATCACGTGTACATGACGTAGTGTTCACGTGGGTCGAGTCTGTCACTACAAGTAGTTTTAAAGTCTGTCTAGTAGAGAATGGGGTAGGATCAAGTGGTAATGTGACTATTAATTGGATTGCTTACCAAGGCGTCCAGTCTGGTGTGACGGACGGCTCTGTGAGGTTGAACGACTGGACGACGGGAACGGAATGCAAACAAGTTCGTCTTTCCCAGGCCTTTGCAAGTGTTCCTCATGTCTTCGTTACTGCACATCACAATGTGTTGGACAACAAGCATGATGCAGCTACAGTTTGGGTGGAAGGAATCACTAGAAACGATTTTACTGTTTGCATGAGAGAGGCAAGAACCTTTGATGGACGCCATAAAGACATCGATGTGACTTGGATGGCAATGACTGAAGTTCCCCAGACATGGAATTATCATGACTTTATCAGAGTAGACTTTCCAAACACTCTTGTACCAAGCGAGGCTGACAATGATGCGTTTTGCCAGATTGTGAGTTTCCACGAGCCGTACTATGCTCCACCGACAATCGTTGTTGCTCCAAGTCATCACTATGACAGCAGTAATGTCAATGCCATTCATCCAAAAGACAACTCCATTGCTGCCTGGGTTGAGGAAACTACACGAACACACTTTAAAACATGTGTTAAAGACCTTGTYGGGCTGAACAACAAACATCATCCTATCGAGGTGGACTACATGGTGTTTGGAGATCTTGATCCATGCATCAACAAGACCTGTGAATATTTTGGTGTTTGTCAAGCCATGTCAGCAAGTGTTGCTCAGTGTGTGTGCGTTACCCAGTGTCCATCTTACCAAGATCTCGGTAAATTCAAGGGGATCCCTACAGTACTCGTCACTCTTGAACACCAAAGAAACGGACTTAAGCACGATGCTGCCAGCATTTGGCTTGAAGATGTCAGTCCATTTTTGTTTCAAGTTTGTATCAGAGAGCTTCAAAACTTTGATGGAATACACGAAGACATTGATGTGGATTGGATGGCCTTCGAAACACTTCATCTTCCACTATTCTCTGAACATGGCATAGTAAATTTTTCAAATGCCTACACTCCTTTAAAATCCAATAACTACGCTTTTTGTAAGTCGCCTGCGGAAACTGAACGTCCTGAAAATCAAATGATTGCCTTAGAACGCATTTCGCGGGTGACTACCCAGGGGTCTCGTTTTCTGAGAGAGCTTAAAGAACTAAATGGCTTTTATAAAGAAATCGAATCCTTGCAACGGAAAGGGTTCCAGAAACAGTTGTCCCTTATGCCCTTTGCTCTTGACCTTACGTCTAATGAAGGTGTTTCTTTACAGGACATCACAACACAAACATTCCGTGTTTGCCTCAAAGAGTTGTACTCGGACCGCTATGACCCTGTCACCCTGCAGTATGTGGTTGTATCAGATGTTGATGAATGTACTTCAGCTGTTCATTCTTGTGATGCCAACGCGCAGTGTACAAATAATGTTGGGTCCTATGCCTGCAGTTGTCACCTTGGCTTTAGTGGTAATGGGAGGAATTGTTCAGATATCGACGAATGTTCGTCTGGTTCACATACCTGCAATGCCTACGCACAATGCGCTAATACAGTTGGAACCTACACTTGCCAGTGTAACCCGGGCTATCATGGAGATGGATGGGCTTGTACAGATGTCGACGAGTGCACTAGAGGTTCCCATTCTTGTGATGCTAACGCACAATGTACGAATAACGTTGGTTCCCACACTTGCCAGTGTAACCATGGTTTCCTTGGCAATGGATGGACGTGCTCAGATGTGGATGAATGCTCGACAGGTGCCCATACCTGTAATGTCAATGCACAATGTACTAACACAGTTGGGTCATATAGCTGTCAATGTAAACTTGGTTTTCATGGCAACGGACACACGTGTACAGATACCGATGAATGCTTGTCCGGACTCCATTCTTGTCATGCAAATGCACAATGTACTAATACTGTTGGATCTTACACTTGCCGCTGTAACAGTGGATACGAAGGGGATGGATTAACATGCAGAGCTTATCCAAGGTCTTGTAAGGATCAAAAGAGCAATTTCCCCGCATCATCATCAGGTTCTTACACCATTGATCCAGATGGTCAAAATGGAGAGTCACCATACACAGTTTATTGTGACATGACTGACAAAGGTGGGGTTGGGGTAACGGTCATCGGTCACAATAGGGAAAGCACGACCAGTGCAAACCACTGCAGTCCCTGCAGAATAAATGTTGTCTATAATAATGGAGTGTCAATTTCCCAACTGGCGACACTAACTGCAATATCATCAAATTGTGAACAATATATCGAATATCAGTGCTGGGGTGATGTAGCTTTTGTTGAAGAAACCTACGCTTGGTGGGTGTCACGTGACGGTGTAAGTCAGTACTACTGGGGAGGAGCGACACCAGGTAGCTACAAATGTGCCTGTGGTATGACAAATTCGTGTTATGATGGCAGAGGATGTAACTGTAATCAAAATGACAATAATTTTTGGCGTACTGACAGTGGTCTCCTTACTGATAAATCCACCCTACCGGTAACAGAGATTAGGGTTTCAGATACTGACCACGACGATGAAAATGCGAATTATCGACTTGGTAAATTTAAGTGCTACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V8T4	Contactin-associated protein like 5-3 OS=Rattus norvegicus OX=10116 GN=Cntnap5c PE=2 SV=1
Q0V8T0	Contactin-associated protein-like 5 OS=Canis lupus familiaris OX=9615 GN=CNTNAP5 PE=2 SV=1
Q8WYK1	Contactin-associated protein-like 5 OS=Homo sapiens OX=9606 GN=CNTNAP5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000086 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410 all species →	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR052235 all species →	Family	Nephronectin domain-containing protein	Interproscan
IPR000885 all species →	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24050 all species →	PA14 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ12876.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ12876.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

36.0Max TPM

15.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	8.07	13.73
whole animal · symbiotic	36	32	22.70	36.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.73
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.59
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.07
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.04
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.80
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.58
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.17
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.74
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.63
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.47
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.32
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.27
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.10
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.03
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.51
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.34
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.16
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.78
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.70
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.07
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.98
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.70
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.50
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.37
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.35
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.32
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.28
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.92
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.90
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.40
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.73
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.01
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.71
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.10
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.68
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.45
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.34
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.19
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.94
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.53
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.31
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.05
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.68
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.51
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.33
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.80
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.57
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.41
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.66
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.27
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.86
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.67
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.45
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.38
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.04
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.87
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.82
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.08
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.01
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.68
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.24
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.15
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.52
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.