Gene detail

Detailed information of KXJ13134.1 in Exaiptasia diaphana

Genomic Location: LJWW01000295.1:225527...247446
NR annotation: KXJ13134.1, Voltage-dependent L-type calcium channel subunit alpha-1C [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ13134.1

ATGGACTTTGTCAACCTTAAACAATGCGGGTTGTTTGTCGAAGACTACAATGTTACGAAGATCGGGGAATCATGGAACAGAGGAATTCTCTCCCAATATCACTACCTTTATGAACTGCCAAARCACTTCTCCAAATGCTCCACATCAGCCTGGTTCAACAATACTGACATGCGTGGTAGTGTTTTCTTGAGCTTCCAAGTGAAAAGCATTCTGGGTAATACCATGATGAACAATGCACGTGTTTGTGCCAAGTACTGCTGTCGTGAACCTCGATGCAAAGCCTGGACGTTAVGAGTACAAGAAGGAGAGACAAGAAATTGCGATAAAGGTTCGTATTGCTGTTGGCTAAAGAGCGCAGTACCGGAAGTCCAAACTGGTGCAGAGAACAGCACATCCGGGATAGTGGATCGTGTWAAGACTAGAGACCCACCAACGGGCATGCGCTCTGCTGTACCGCTTGGTGGTATCACTACAGGCTCATTCGAGCTCCATGCAGACGGCACGTTTCATGAATGGACGATTGAGAACCAATCGCCTGGTGGATCAGCCAAGCTGAATAAGGGAGCTCTAGATATGGCCCTTCTTGGTGTTCATGTGAGCAGTAAACATTCCAGCCAAAGTGCTTTATTAAGAACSTTTCCCCCACAGGGGTACCCTGGAGTTGAGACGCTATCATATTCAGGGGCCTACCCAGTCAGTAAGCTGACTCCAGGTGGAAAGATAACAAACCGGGTCAACATGGATCTATACGCGTATCCTTCCTTCCAGCCGAGAAATCCTTACAAATCTGCTGTCCCAGCTGTGGCGTTCACTTTAAATGTTGAGAACAAAGATCAATACAAGCCTGTTAACGTATCGTTCATGCTGAATCTTCCCCTTGGATCTCAAGAAGACACCATTCGAGTTGGGGACAACTATGGAGAAGCTGTCTACACAAGCCAAGACGTCGCAGAGCACATGCGCGAGAACATCTTAGAGACKGTAGAGAATATCTTAAATTGGCAAGAACCATTCCTCCTKCCGAGCTCGTTCCCACAGGGAACCCAACCAATGAATAAATTGCCTCTGTGGTTGAATGACATGTTAATGAACAGTGTTAGCTATTGGMGGTCGTCATTTTGGACTAGAGATGGACGATGGAGACAATGGGAAGCTTACGACTGTAACGATATTGATACAATACATAATGATATGCAGAGGATACTACCTTATATGGTATTCTACCCAGAGGTTGTACGACATCTGTTACTTACTTGGGCTGCTAACCAATTATCTAATGGAATGATTGAAGAAACTTTGAGCGAAGGCTGTCTTGGTTCCACTGGAAAACTGGACAATGCAGGAGGACGTGTGATGGCGGACAGTACCTCAATGTTTGTGGTTGGTGCATATTATTACTACAAGTGGACTGGAAACACGGATGTTCTTAATAAACTCTGGCCCTCTTGTAAGAAAGCTATCACATGGCTGATCGTTGACAGTACAAAAGGTACTGGACTACCATTTCGAAAAACCACATTTTACAGCTTATCAGGTATCGATAAATACGACCACCATCTCTACGATAGTATGGTCTACCTTTTGGCGCTAAGAGCATCACGTGACCTGGCCATTCGTGTACACGATTTTGCATTTGAAAGGACTATATCCGCTGCATTAGACAGAGGACAGTCATTAGTCGAAATAGAGTTCTGGAATAGGCATAACAACCATTATAGAGCTTGGTGGGATATGGAGTATGGCGCTGGTGATTGGTTAATGTCTGACTCCTTYTATGGGCAGGTATGGGCCTATACTCTTGGCCTGGGGGATCTRGTACCCAGAGAAAAATTACGTCATCACCTTGAAATGGAGGTCGAAATTAACGGCTCACCTTGGGGTCTGCGGGTTATCGACGACAAGCGACCAGCAATGACCGAAGAGGACACTTCTCTGATATTAAGCTACAAATATCCCGGATGTGAGTCCCTGGAAAACGTCTCAAAGCATAAGTCTATTTGGATGGGAGCAGACGCTAATTGGGCAACGTTGATGATACATCTTGAAACCGACCCTAACAAAGCCTTAAATCAAGCCAAGAAGCCTTTAGACCATTGGAGATCCTACCTCAACGACCAGTGGAATATTCATGGTGAAATATCCTCAGGGGGGTATGGACAGGATGGACTGCCGTGGGCTAATTCACATTCAAATGCTCACTTAGTAATGTGGCATATTCCTTTGGCGGTCAGCGGTCAACAGTATTCGGCACCAGACCTCTCTCTTACATTTTGGCCAATGATGCAGATTCCCTTTCAGTTGCCTTTCTTTATCCCGACAGCCACTGGGCTTATTGAAGGCAAGATGGTGGGAGAAAATGAYTTCTTCCCTGARGAGATGTTCACATTTCGAGTAACATCGGGTGAGGTTAAACTTAAAGAACTGAAGATATTTGGCGCTCCATATGGACGAGGTCTAGTACATCTCAAGGCAGGGTCAGTAGTATCTTGGTCAAAACCTAGAGCAAACGTTAAAAACATACTGATATTGATGCTGGATAGTCCTTTACCAGAAAACGATACTACAGAACGAAACCAAAAATTGGAAACCGCAGAAACCGTATTCGTTGTGATATATTGTGTCGAAGCAGTGACTAAAATCATTGCTCTTGGCTTTGTGTTTCATCCCAACGCTTATTTAAGAAATGGATGGAATATCTTAGACTTTGCTGTTGTTGTTGTTGGACGCGGGTTGTCAAGTGACAGAAGCGAGTTTTTTATTGTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01815	Voltage-dependent L-type calcium channel subunit alpha-1C OS=Mus musculus OX=10090 GN=Cacna1c PE=1 SV=1
O35505	Voltage-dependent L-type calcium channel subunit alpha-1C OS=Cavia porcellus OX=10141 GN=CACNA1C PE=1 SV=2
P22002	Voltage-dependent L-type calcium channel subunit alpha-1C OS=Rattus norvegicus OX=10116 GN=Cacna1c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF12215 all species →	Glyco_hydr_116N	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term	Family	Interproscan
PF04685 all species →	DUF608	Glycosyl-hydrolase family 116, catalytic region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR052566 all species →	Family	Non-lysosomal glucosylceramidase	Interproscan
IPR024462 all species →	Domain	Glycosyl-hydrolase family 116, N-terminal	Interproscan
IPR006775 all species →	Domain	Glycosyl-hydrolase family 116, catalytic region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12654 all species →	BILE ACID BETA-GLUCOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ13134.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.