Gene detail

Detailed information of KXJ13167.1 in Exaiptasia diaphana

Genomic Location: LJWW01000294.1:31427...32794
NR annotation: XP_020902273.1, DNA excision repair protein ERCC-8 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFD5	DNA excision repair protein ERCC-8 OS=Mus musculus OX=10090 GN=Ercc8 PE=1 SV=2
Q13216	DNA excision repair protein ERCC-8 OS=Homo sapiens OX=9606 GN=ERCC8 PE=1 SV=1
Q5BIM8	DNA excision repair protein ERCC-8 OS=Bos taurus OX=9913 GN=ERCC8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007376 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042238 all species →	Family	DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46202 all species →	DNA EXCISION REPAIR PROTEIN ERCC-8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000109 all species →	Cellular Component	nucleotide-excision repair complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0031464 all species →	Cellular Component	Cul4A-RING E3 ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10570	ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ13167.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

36.8Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	18.69	36.77
whole animal · symbiotic	36	32	15.27	24.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.77
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.12
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.57
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.31
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.65
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.37
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.65
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.72
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.72
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.96
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.76
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.86
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.58
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.55
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.51
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.47
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.38
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.36
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.13
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.75
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.70
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.14
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.08
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.91
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.93
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.86
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.83
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.64
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.65
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.04
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.95
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.91
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.55
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.22
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.18
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.64
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.78
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.68
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.61
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.52
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.98
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.70
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.54
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.87
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.19
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.82
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.49
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.74
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.65
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.25
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.16
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.11
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.88
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.75
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.61
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.02
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.87
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.47
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.39
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.01
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.41
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.67
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.53
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.76
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.09
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.63
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.82
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.