Gene detail

Detailed information of KXJ13489.1 in Exaiptasia diaphana

Genomic Location: LJWW01000283.1:55040...60206
NR annotation: KXJ13489.1, Polyglutamine-binding protein 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1YFA7	Polyglutamine-binding protein 1 OS=Gorilla gorilla gorilla OX=9595 GN=PQBP1 PE=3 SV=1
O60828	Polyglutamine-binding protein 1 OS=Homo sapiens OX=9606 GN=PQBP1 PE=1 SV=1
A2T806	Polyglutamine-binding protein 1 OS=Pongo pygmaeus OX=9600 GN=PQBP1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006215 (this species only)

Pfam domain

No Pfam domain signature was detected for KXJ13489.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21737 all species →	POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000380 all species →	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12865	PQBP1, NPW38; polyglutamine-binding protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ13489.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

62TPM > 0

2Conditions

9.0Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	4.63	9.02
whole animal · symbiotic	36	31	5.28	8.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.02
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.25
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.52
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.17
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.16
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.72
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.38
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.21
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.96
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.93
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.92
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.65
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.64
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.59
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.47
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.09
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.82
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.74
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.73
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.67
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.62
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.54
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.54
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.48
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.11
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.97
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.91
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.85
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.85
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.40
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.76
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.41
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.83
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.81
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.78
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.65
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.79
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.74
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.68
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.68
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.58
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.53
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.51
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.29
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.16
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.15
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.08
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.98
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.98
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.84
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.61
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.51
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.49
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.48
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.46
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.30
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.26
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.25
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.90
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.63
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.40
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.17
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.