Gene detail

Detailed information of KXJ14489.1 in Exaiptasia diaphana

Genomic Location: LJWW01000250.1:62286...71043
NR annotation: KXJ14489.1, Acetolactate synthase-like protein [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NV04	2-hydroxyacyl-CoA lyase 2 OS=Danio rerio OX=7955 GN=ilvbl PE=2 SV=1
A6QQT9	2-hydroxyacyl-CoA lyase 2 OS=Bos taurus OX=9913 GN=ILVBL PE=2 SV=2
A1L0T0	2-hydroxyacyl-CoA lyase 2 OS=Homo sapiens OX=9606 GN=ILVBL PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004763 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045229 all species →	Family	Thiamine pyrophosphate enzyme	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18968 all species →	THIAMINE PYROPHOSPHATE ENZYMES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003984 all species →	Molecular Function	acetolactate synthase activity	Interproscan
GO:0005948 all species →	Cellular Component	acetolactate synthase complex	Interproscan
GO:0009097 all species →	Biological Process	isoleucine biosynthetic process	Interproscan
GO:0009099 all species →	Biological Process	L-valine biosynthetic process	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03783	punA, PNP; purine-nucleoside phosphorylase	EC:2.4.2.1	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ14489.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

64TPM > 0

2Conditions

28.4Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	7.40	28.44
whole animal · symbiotic	36	32	7.69	12.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.44
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.51
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.29
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.69
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.55
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.50
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.44
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.86
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.53
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.31
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.06
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.72
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.68
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.54
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.42
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.22
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.98
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.86
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.70
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.55
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.45
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.23
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.19
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.18
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.15
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.05
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.99
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.37
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.20
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.17
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.77
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.62
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.16
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.97
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.63
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.98
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.92
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.61
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.50
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.08
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.07
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.02
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.37
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.25
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.93
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.85
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.46
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.28
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.17
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.13
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.99
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.88
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.84
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.76
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.67
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.61
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.54
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.37
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.11
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.91
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.34
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.08
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.83
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.47
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.