Gene detail

Detailed information of KXJ14531.1 in Exaiptasia diaphana

Genomic Location: LJWW01000249.1:99129...106106
NR annotation: XP_020900107.1, histone chaperone asf1 isoform X1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V464	Histone chaperone asf1 OS=Drosophila melanogaster OX=7227 GN=asf1 PE=1 SV=1
Q2KIG1	Histone chaperone ASF1A OS=Bos taurus OX=9913 GN=ASF1A PE=2 SV=1
Q9Y294	Histone chaperone ASF1A OS=Homo sapiens OX=9606 GN=ASF1A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007383 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04729 all species →	ASF1_hist_chap	ASF1 like histone chaperone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036747 all species →	Homologous_superfamily	Histone chaperone ASF1-like superfamily	Interproscan
IPR006818 all species →	Family	Histone chaperone ASF1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12040 all species →	ANTI-SILENCING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006335 all species →	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0006336 all species →	Biological Process	chromatin organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10753	ASF1; histone chaperone ASF1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ14531.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

64TPM > 0

2Conditions

44.6Max TPM

21.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	16.94	25.72
whole animal · symbiotic	36	33	25.94	44.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.72
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.41
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.38
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.92
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.62
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.71
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.51
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.50
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.00
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.86
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.77
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.72
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.69
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.65
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.36
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.09
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.67
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.51
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.80
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.71
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.03
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.90
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.85
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.56
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.44
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.21
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.87
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.75
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.35
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.16
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.17
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.56
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.72
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.42
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.16
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.70
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.84
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.31
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.04
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.85
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.86
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.70
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.54
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.53
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.20
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.96
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.89
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.02
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.96
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.51
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.49
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.37
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.32
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.07
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.01
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.66
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.56
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.51
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.50
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.43
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.91
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.45
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.95
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.88
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.