Gene detail

Detailed information of KXJ14545.1 in Exaiptasia diaphana

Genomic Location: LJWW01000249.1:243424...245166
NR annotation: KXJ14545.1, Iron-sulfur cluster assembly 1-like, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8T3X9	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster OX=7227 GN=MagR PE=1 SV=1
Q3SZG8	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus OX=9913 GN=ISCA1 PE=2 SV=1
Q9BUE6	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=ISCA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006887 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01521 all species →	Fe-S_biosyn	Iron-sulphur cluster biosynthesis	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016092 all species →	Family	FeS cluster insertion protein	Interproscan
IPR017870 all species →	Conserved_site	FeS cluster insertion, C-terminal, conserved site	Interproscan
IPR050322 all species →	Family	Iron-sulfur cluster assembly and transfer HesB/IscA	Interproscan
IPR035903 all species →	Homologous_superfamily	HesB-like domain superfamily	Interproscan
IPR000361 all species →	Domain	FeS cluster biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10072 all species →	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0097428 all species →	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13628	iscA; iron-sulfur cluster assembly protein	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ14545.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

85.0Max TPM

46.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	48.31	75.49
whole animal · symbiotic	36	32	45.39	85.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.49
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.22
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	73.41
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.82
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.49
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.19
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.05
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.66
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.92
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.01
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.50
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.80
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.00
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.68
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.05
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.95
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.06
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.92
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.30
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.50
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.31
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.49
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.37
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.56
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.78
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.98
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.62
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.87
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.69
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.37
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.81
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.50
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.85
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.05
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.03
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.33
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.13
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.28
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.91
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.69
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.46
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.39
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.39
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.82
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.63
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.79
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.43
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.20
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.24
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.53
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.13
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.61
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.76
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.78
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.26
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.65
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.40
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.04
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.95
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.45
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.94
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.19
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.89
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.53
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.40
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.94
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.