Gene detail

Detailed information of KXJ14796.1 in Exaiptasia diaphana

Genomic Location: LJWW01000241.1:105834...122704
NR annotation: XP_020899705.1, protein strawberry notch homolog 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ14796.1

ATGGCCGACACCGGTCAAGAAAATAGCTCCAGTTTTGCTGGAATAGATCTGTTATCTGAAGCGTTAGGAGAAAGTGGTCTAAATCTTGAAGAACATTTTGATTTTTTTGAAAATGCACCGGCTACCACGCTGTCAAGTTTTGCAGGTCTTGACTATCTTGGTGTGCTAGACAACCTGACTTCTACTCTTCCTAATACAACACCGACAACATTACAGAATTCGTCTATAGTTGAACATGTTCCTGCTGGACAGAATATTGTTGGAACTGAGGATCTTTTCTCGCGAGTTCAACCAATATCAACATTATCTGGTGTTGTACAATCTCAACCAAACGTGGTTTTCTCTCAGCCTTCTCTTGCACTTTCATCCGAAGTCCCATCATCAGCCACTCGCGTTCTTCAGCAACTTTTGTCCCAAAATTCACTGGACTCAAGAAGTCAGAGAACTGCTTTGTCTAGTTCTTCGCCTTTAATGATCGACCTAGCAAGCACTTCTAACCAAATACACTCCAATCAACTTTCTTGGCCGGGAAGTTCACCAAGTAGAAGTGCGCTGTTTTCACAAAACATCTCTGACCAGAAAAGGGAACTGTCCAAAAAAGATGTGTCGCGGTTATGGTCCAATGACATTATTATGATGACCAAAAAGAATGAGGCAAAGATGGAGAATGATTTATCAGTTGAACCAGAGGAAGAAGAAGAAGATGAAGATTTAGGATATACAGACACGTATGCTGAATATATGCCTACCAAATTGTCATTTGGGAAACGTCATCCAGATCCAGTCGTTGAAACTAGTTCCTTGGCAAGCGTTTCTCCGCCCAATATCTGGTACAGACTACAGCTCCCGCAAGATGTTATAGACAGTGCACATTTATCAGCCTTGCAGCTTGAAGCTGTGGTGTATGCTTGTCAGAAGCATGAAACATTTCTCCCAAATGGAAACAGAGCAGGATTTTTAATTGGTGATGGTGCCGGTGTAGGAAAGGGTCGAATTGTTGCAGGAATTATTTATGAAAATTATCTTTTGGGAAGAAAAAGGGCAATTTGGTTTAGTGTATCAAATGATTTAAAGCATGATGCGTACAGAGATCTTAAAGACATTGGCTGCAATATTCATGTTAATTCTCTTAATAAGTTTAAATATGATGTCAAACTGTCTTCAAAATCTCTTGGTGGGATTAAGAAGGGTGTCATTTTTGCAACATACTCATCATTGATTGGAGAAAGTCAGAGTACAGGAAAGTACAACACAAGACTGAAACAATTACTACACTGGTGTGGTTCGGACTATGAAGGAGTTATCATTCTTGATGAATGCCATAAAGCTAAAAACCTTGTTCCTACTGGTTCCTCAAAGCCAACCAAGACTGGTCTTGCTGTGCTGACGTTACAAAACAGCCTTCCTAAAGCTAGAGTGGTTTACTGTAGTGCAACAGGAGCGTCAGAGCCAAAAAATATGGCCTACATGTCACGACTTGGTATCTGGGGTATTGGTACACCTTTTAGAGAATTCAATGATTTCATTCAAGCTGTAGAACGCAGGGGTGTTGGCGCTATGGAGATAGTTGCTATGGACATGAAACTACGTGGGATGTACATGGCTCGTCAACTTAGTTTTGCTGGGGTTGGTTTTGATATAAAGGATGTTTGTTTGAGTGAGGAGTTCATTCAGATGTATGATGCTGCTGTTCAACTGTGGGTTGATGCCAGAGAAAAGTTTGAAAAAGCAGCAGACATGATGGATGCAGACAGTAAGCTCAAGAAGACAATGTGGGGGCAGTTTTGGTCTGCACATCAGAGGTTTTTTAAGTATCTTTGCATCGCATCTAAAGTCAAAGCTGTTGTAGAAATTGCCCAAAGAGCTATTGCCATGGGAAAGTGTGTTGTGATTGGTCTACAATCAACAGGAGAGGCAAGGACGCTGGAGCAACTTGAAGAGTCTGGGGGAGAACTTACTGATTTTGTCTCAACAGCAAAAGGTGTATTCCAAACCTTGGTTGACAAACATTTCCCTGCTCCTGATCGTAAAAAAATGGCTGGTCTCCTTGGTCTTGTAAGAGACACTGATTCTAATGGCTCAAGATCAGCTGTGTCTTCTCCTGTACCTAAACGAAAACGAAAAAATTTTAAAAAGGCAAAACCACCAAAAAAGTTGAAGACAGGCCTTGAACGCATATTTGACCTAAGCAGTGATTCAGATAGTGATTCCAATGAAGCCAGTAATGATGAGAACAAAGGAACTAACGACAGCCTGGAGTCTGTAGAATCAGACAATAATGAACAGTCATCTGGTAACGAGTCTGAAGAAGAAGAAGAAGATGACTTTAATCCTTTTGGTGGCTTTGGATCAGACCAGGAAGATCCATGGCTTAACAGAAAAACTAAAAAGAAGAGTAAAAGTAAATCAAACAGAGCGAGTCCAGACACATCAGACCCCGCTATGAGTGCATTAGCAGCTGCAGGACTCAATGTATCGACACCTATTTGGAATAGTTCAATAAAGCCAAGTAAGACATTTAATGGCTTGCCAGATTTATTACCAGCAAGAACATCCAGCCCAACCTCCTTTGGAAGTAAAAACCTTTTACAAAAAGCTCAACTAAACATGCACCATTCTCAGAGTGCACCAGTTCTGTCATCTCTTTTACAATCCTCAACTGGTAGTCCAACACAAGGGTCTGCAAGTGATCAGTGTTGTGCTATGAAGAAAGAATTACTGGAAAAAGTAGAAGTTCTTAGTAAACAGTTGCCACCTAATACCCTGGATGAACTCATCGATTCCTTGGGTGGACCAGATAAAGTCTCTGAGATGACTGGTCGTAAAGGTCGTGTCGTTAGCCATGATGATGGCACCGTCAGCTATGAATCACGCAGTCGGCAAGATGTGTCGCTAGAATATCTAAATATAGAAGAAAAGAAGAGATTTATGTGTGGCGAGAAGTTTGTAGCTATAATTTCTGAAGCAGCCAGTTCTGGAATATCACTTCAAGCAGACAGACGAGCACAGAATCAACGACGAAGAGTCCACATCACTCTGGAATTACCATGGAGTGCAGACAAAGCAATACAACAATTTGGGCGGTCTCATCGGTCCAACCAAGTAAGTGCACCAGAATACATCTTCCTCATCTCAGAGCTTGCAGGAGAGAGACGGTTTGCCTCTGTTGTTGCTAAGAGACTGGAAAGCTTGGGTGCTTTAACACATGGTGACAGACGAGCTACTGAATCACGTGATCTTAGTCGCTATAACTTCGATAATAAATATGGACGTGCAGCTCTTGAAGCTGTCCTCAAGTCTATTTGTGGTCACGCAACTCCTATGGTACCACCACCATCAAACTACAGTGGAAACTTCATAAATGATATTCGTGTTGCTCTTGTTGGCGTTGGGTTGGCAACAAGAGATGATCGAGGGATATATAACATACTAGACAAAGATTACACCAATTTATCTCGGTTTCTTAATCGTATACTCGGTATAAGTGTCCAACTTCAAAACCTTTTGTTTGGTTACTTCATGGACACTCTTGCAGCAATCATTCTACAAGCCAAGAGAAGCGGCAGATGGGACGAAGGAATTCTTGACCTTGGATCCCAGGGTGAAGAAGTCACTGAACTAAGCGTTCAAACGTTTGTTGGAAGTAAAACGATCGGTACAGCCACCACAGAGCTACACACGGTCAGCGTGGAGCGTGGAGCATCATGGGAGCACGTATTTAATCTGTCATTAGATCAAACCGACCCAAATGAGGGATTTTATGTATCACATACGGTCCGTAACGACAAAAGGACAGCAATCTTTGTTGTGTGTCAAAAGAAAAAAATGTACGGCATTTATCGACCTAACACAGGACTACAGACTAAACATGAAAGTATACAAGATATCAAGAAAAAATACAAAAAGGTAACTTCAATCGAAGCCAAACCTTTCTGGCAAGCTCAGTATGAATCATCGTTTTCTCAATGCAGTCACGCCTACTGGAAAGGAAACTGCAAGAAAGCGACTGTAGGTTTGACGTGTGAGGTTGGCCTCAGACGTCGGTCTTTTAATATTCTAAGTGGATCTGTTCTAAGTGTCTGGAGTAAAGTGGAAAGCGTTCTTGCAGGACAGCCTGGGCATAATTCCAAAGTCCAGATTATTCGGTGTAAACGAAGCGATGGTGGAAAGATCGTTGGATGTCTTATTCCAAGTAATTGTGTCCCAGCACTTGCGCGGGCTTTGTCACCCAGTGAAGACGGACAAACAGAGACTATCGAGATATTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q689Z5	Protein strawberry notch homolog 1 OS=Mus musculus OX=10090 GN=Sbno1 PE=1 SV=2
A3KN83	Protein strawberry notch homolog 1 OS=Homo sapiens OX=9606 GN=SBNO1 PE=1 SV=1
Q5BJL5	Protein strawberry notch homolog 1 OS=Rattus norvegicus OX=10116 GN=Sbno1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13872 all species →	AAA_34	P-loop containing NTP hydrolase pore-1	Domain	Interproscan
PF13871 all species →	Helicase_C_4	C-terminal domain on Strawberry notch homologue	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039187 all species →	Domain	Strawberry notch, AAA domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR026741 all species →	Family	Protein strawberry notch	Interproscan
IPR026937 all species →	Domain	Strawberry notch, helicase C domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12706 all species →	STRAWBERRY NOTCH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26273	SBNO, SNO, FGT1; protein strawberry notch	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.