Gene detail

Detailed information of KXJ16092.1 in Exaiptasia diaphana

Genomic Location: LJWW01000206.1:331526...345425
NR annotation: KXJ16092.1, Xanthine dehydrogenase/oxidase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ16092.1

ATGAGACATTCCKTTTGTAAATGTTTTAATTTCTTTGACAGCCGTAAAAATGGTTTCCATACCATCCAGAAGAGAGTTGCAGAGCACAATGGYAGCCAGTGTGGTTTTTGTACTCCAGGCATGGTGATGACTATGTACAGTCTCCTAAAAGAAAATCCAAAACCYACCAAACAGGAGATTGAAGACAGTTTTGATGGAAACATTTGTCGCTGTACAGGTTATCGTCCTATTCTTGATGCTATGAAGACTTTTGCTGCTGATGCTCAACCAATAGACATTGAGGCCTACATCGGAGCACTTGGTGATCATGCACCTGATAGGCTGAAGTCTGCAGCAAGGTCGATTCTCCAAGAAAGAGCTGTTTCAAGCGGTATTCAGAACTATGAGTCCAAGCCCGATAGGTACCCAATCAGCAATCCAATGACAAAGATTGCTGCTAAACTCCAGGCCGCTGGAGAAGCTCAGTACGTCAATGACATACCGTCCAGTGAGGGGGAGGTGTATGGAGCTTTTGTCCTTAGCACTAAGGGAAACTGCAAAATTGACAAAGTGGATCCATCAGAGGCGCTAGCAATTCCTGGTGTGATAAGTTACTTTGATGCAAATGACATCCCAAAGGGTGGAATCAATGAACTTAAGTTTTTCAACTTTCCCGGACCTGCTGAGGGCGTGTTCTGTCAAGGTGATGTCTTGTTTGTTGGCCACGTGATTGGTATGGTAGTGGCTGATACTCAACGACTTGCAGACGAGGCTGCCAAGTTGGTCAAAATAACATACAAGGATTGCAAGCCTCTGATTTTGACATTTGAGCAGGCTATCGAATCCAAATCATTCTGTCCACCGTTGTCTCCTCCATGGTCTTTAATGATGGCTGACATCAATGTTGGCGATGCTGAAGGTGCAATGACGTCATCGAGTCACGTGATCACTGGGGAGGTGAAGTGCGGTGCTCAGCATCATTTCCATATGGAAACACAGGTGTGTTTGAGTGTACCAAAGGAAGACGGACTTACTCTCTACAGCTCTACTCAAGGAATTACTTTTGTCCAAAAAGGCGTCAGTGATTTTTTAAACGTCAAAGCGACCAGTGTGGATGTGATTGTCCAGAGATGTGGTGGTGGTTTTGGCGGGAAGATTTTACGATCGGTTCAAGTAGCTTGTGCAAGTGCATTGGCCACTAAGGTACTGGACCGTGTGGATGTGATTGTCCAGAGATGTGGTGGTGGTTTTGGCGGAAAGGCATTAAGATCGGTTCAAGTAGCTTGTGCAAGTGCATTGGCCGCTAAGATACTAGACCGACCTGTGAAGATGAAAGTGAATTTTAATACCAACATGGCTAACCAGGGTGGAAGGTCACCACATATGGCGAAGTACAAGGCTGCAGTGAATGACGAGGGAATCCTACAAGGTCTGGAGATGGACTACTACGTCGACACTGGCTGTACAGGAGAAGATAACGATCTTTTGGGCGCCGTAGACCACCTTGATAATTTGTACTACTGTCCAAACTGGAAAGTTAACTTYCACACCTTGCTGACTAGCAAATCCTGTACAACGTTCTGCAGGGCACCAGGCTCTGTACAAGCTGTTTTTATTATGGAATCTATCATGGATCATGTGGCCAAAGCACTCAACAAATCTCCAGAAGAAATCAGAGAAAAGAACTTGTATGAGGAAGGTCAGAATACTCCAGGTGGTCACCCGATTCCATACTGCAGCATCCGAAAACTGTGGAAAGACATCACCGAGACATCAGAGGTCAAAAAGAGACAGCAAGAAATTGCAGAGTTCAATAAGGCCAATCGTTGGAGGAARCGTGGATTGGTTCTTGTTCCTGGTAAATTCAACATCAGTGCATCGATTTCCCAATACACCGTGTTCGTGTCGATCTTCAGTGCYGATGGAACTGTTGCCATCCAACATGGCGGAGTAGAGATGGGACAAGGAATTAATGTAAAGGTTGCTCAAGCTGCTGCCTATGTACTTGGCGTTCCCATGGAGATGATCATTGTGAAGCCAAACCACACCGTTTTTTCACCTAACAGTATGGTTACTGGAGGTAGTGTTGGCAGCGAGGTCTGTGTCAAAGGTGTAATGGAGTGCTGCAAGATGCTGAACGAACGTATCAAACCAACATACAAACCTCCAACAACCAAAGACATTCCTGTAGATCTGAGGGTTACATTTCTCAAAGATGCACCAAACCCTCTAGGTGTCTTAGGATCCAAAGCTTCTGGAGAACCTCCATCTACCATGTCATGCGCATGTCTGTTTGCTGTGAAGCGTGCAGTGGAAGAAGCCAGGAAGGAAACTGGAAATGATGTCCATTTCACTCTTGACGGTCCAGCAACGGTTGAGATGACACAACAAAGCTCTTTGATACAACGCGATCAGCTGACTCTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10351	Xanthine dehydrogenase OS=Drosophila melanogaster OX=7227 GN=ry PE=2 SV=2
P47990	Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
P91711	Xanthine dehydrogenase OS=Drosophila subobscura OX=7241 GN=Xdh PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000566 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF20256 all species →	MoCoBD_2	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR046867 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Interproscan
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00106	XDH; xanthine dehydrogenase/oxidase	EC:1.17.1.4 EC:1.17.3.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ16092.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

398.0Max TPM

169.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	177.80	397.98
whole animal · symbiotic	36	36	161.37	213.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	397.98
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	239.89
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	234.67
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	233.76
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	231.32
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	219.37
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	212.06
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	209.63
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	205.31
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	204.26
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	198.77
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	195.55
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	178.24
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	174.13
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.27
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.88
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.84
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	166.87
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	166.57
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.60
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.25
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.24
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.68
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.33
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	156.09
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.84
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	145.68
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.96
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	140.61
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	138.45
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	124.52
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.79
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.65
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	122.52
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	122.28
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	121.93
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	213.45
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	213.04
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	211.67
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	209.78
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	208.95
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	207.83
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	204.99
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	184.95
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	176.49
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	174.56
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	173.50
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	164.89
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	164.78
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	163.35
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.18
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.29
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	159.33
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	158.52
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	155.57
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	148.62
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	146.78
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	143.56
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	142.66
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	140.22
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	139.09
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	139.00
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	138.95
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	138.53
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	136.16
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	135.87
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	135.19
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	134.45
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.57
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.42
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	130.56
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	126.73

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.