Gene detail

Detailed information of KXJ16111.1 in Exaiptasia diaphana

Genomic Location: LJWW01000205.1:308869...312235
NR annotation: XP_020897401.1, outer dense fiber protein 3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVY1	Ciliary microtubule associated protein 1A OS=Xenopus laevis OX=8355 GN=cimap1a PE=2 SV=1
Q5EB30	Ciliary microtubule associated protein 1A OS=Xenopus tropicalis OX=8364 GN=cimap1a PE=2 SV=1
A8MYP8	Ciliary microtubule associated protein 1B OS=Homo sapiens OX=9606 GN=CIMAP1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07004 all species →	SHIPPO-rpt	Sperm-tail PG-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051291 all species →	Family	Ciliary Microtubule Associated	Interproscan
IPR010736 all species →	Repeat	Sperm-tail PG-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21580 all species →	SHIPPO-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25636	ODF3; outer dense fiber protein 3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ16111.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

55.8Max TPM

23.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	15.22	39.64
whole animal · symbiotic	36	33	31.36	55.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.64
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.22
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.14
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.06
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.56
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.89
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.66
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.90
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.78
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.56
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.51
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.05
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.98
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.01
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.91
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.70
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.16
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.75
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.72
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.47
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.35
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.32
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.15
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.12
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.07
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.88
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.92
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.37
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.80
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.71
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.15
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.32
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.22
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.84
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.65
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.57
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.03
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.16
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.29
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.29
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.33
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.17
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.62
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.00
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.48
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.99
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.89
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.15
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.74
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.74
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.04
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.87
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.61
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.97
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.95
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.62
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.11
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.88
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.53
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.07
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.58
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.92
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.73
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.10
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.15
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.74
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.