Gene detail

Detailed information of KXJ16632.1 in Exaiptasia diaphana

Genomic Location: LJWW01000192.1:177402...179246
NR annotation: KXJ16632.1, putative peptidyl-tRNA hydrolase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BW00	Probable peptidyl-tRNA hydrolase OS=Mus musculus OX=10090 GN=Ptrh1 PE=2 SV=1
Q86Y79	Peptidyl-tRNA hydrolase OS=Homo sapiens OX=9606 GN=PTRH1 PE=1 SV=1
Q9KGJ3	Peptidyl-tRNA hydrolase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=pth PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007228 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01195 all species →	Pept_tRNA_hydro	Peptidyl-tRNA hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036416 all species →	Homologous_superfamily	Peptidyl-tRNA hydrolase superfamily	Interproscan
IPR001328 all species →	Family	Peptidyl-tRNA hydrolase	Interproscan
IPR018171 all species →	Conserved_site	Peptidyl-tRNA hydrolase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17224 all species →	PEPTIDYL-TRNA HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004045 all species →	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01056	PTH1, PTRH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family	EC:3.1.1.29	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ16632.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

52TPM > 0

2Conditions

3.6Max TPM

1.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	26	1.20	3.61
whole animal · symbiotic	36	26	1.09	2.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.61
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.31
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.72
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.50
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.46
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.26
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.25
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.94
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.79
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.79
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.69
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.62
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.48
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.44
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.41
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.37
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.28
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.18
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.10
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.05
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.98
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.96
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.87
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.85
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.76
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.58
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.54
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.51
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.24
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.13
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.08
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.07
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.91
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.89
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.79
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.77
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.67
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.61
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.58
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.51
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.44
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.42
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.42
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.17
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.04
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.97
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.83
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.83
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.76
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.69
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.67
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.65
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.