Gene detail

Detailed information of KXJ17331.1 in Exaiptasia diaphana

Genomic Location: LJWW01000175.1:226202...227457
NR annotation: XP_020895156.1, calcyclin-binding protein [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T168	Calcyclin-binding protein OS=Bos taurus OX=9913 GN=CACYBP PE=2 SV=1
Q6AYK6	Calcyclin-binding protein OS=Rattus norvegicus OX=10116 GN=Cacybp PE=1 SV=1
Q9CXW3	Calcyclin-binding protein OS=Mus musculus OX=10090 GN=Cacybp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09032 all species →	Siah-Interact_N	Siah interacting protein, N terminal	Domain	Interproscan
PF04969 all species →	CS	CS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015120 all species →	Domain	Siah interacting protein, N-terminal	Interproscan
IPR037201 all species →	Homologous_superfamily	Calcyclin-binding protein, N-terminal	Interproscan
IPR007699 all species →	Domain	SGS domain	Interproscan
IPR052289 all species →	Family	Calcyclin-binding ubiquitin ligase bridge	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR037893 all species →	Domain	Calcyclin-binding Protein, CS domain	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13164 all species →	CALICYLIN BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0044548 all species →	Molecular Function	S100 protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04507	CACYBP, SIP; calcyclin binding protein	-	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ17331.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

86.7Max TPM

46.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	39.48	72.32
whole animal · symbiotic	36	33	53.83	86.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.32
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.72
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.74
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.72
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.51
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.18
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.42
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.83
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.30
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.15
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.19
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.14
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.76
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.46
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.34
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.26
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.17
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.02
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.80
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.24
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.82
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.60
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.59
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.79
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.54
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.78
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.69
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.80
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.38
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.08
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.37
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.94
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.73
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.70
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.63
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.62
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.83
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.06
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.68
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.52
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.14
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.00
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.66
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.23
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.98
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.27
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.24
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.27
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.19
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.36
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.48
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.47
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.79
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.61
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.47
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.90
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.83
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.14
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.45
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.02
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.38
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.82
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.47
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.02
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.83
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.77
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.