Gene detail

Detailed information of KXJ18072.1 in Exaiptasia diaphana

Genomic Location: LJWW01000159.1:161500...169536
NR annotation: XP_020893697.1, LIM domain kinase 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCT9	Dual specificity testis-specific protein kinase 2 OS=Mus musculus OX=10090 GN=Tesk2 PE=1 SV=1
Q924U5	Dual specificity testis-specific protein kinase 2 OS=Rattus norvegicus OX=10116 GN=Tesk2 PE=2 SV=1
Q96S53	Dual specificity testis-specific protein kinase 2 OS=Homo sapiens OX=9606 GN=TESK2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050940 all species →	Family	Actin-regulating Serine/Threonine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46485 all species →	LIM DOMAIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08842	TESK2; testis-specific kinase 2	EC:2.7.12.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ18072.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

33.6Max TPM

14.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	13.70	23.77
whole animal · symbiotic	36	34	15.55	33.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.77
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.44
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.90
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.58
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.04
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.76
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.24
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.02
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.87
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.74
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.36
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.34
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.23
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.75
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.65
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.56
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.39
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.26
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.64
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.62
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.46
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.31
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.28
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.17
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.10
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.06
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.04
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.72
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.42
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.30
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.92
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.74
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.72
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.58
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.55
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.24
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.13
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.63
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.08
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.95
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.25
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.54
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.73
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.68
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.52
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.71
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.68
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.60
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.46
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.37
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.34
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.83
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.80
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.78
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.65
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.36
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.16
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.10
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.65
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.54
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.04
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.69
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.51
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.33
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.27
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.89
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.11
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.