Detailed information of KXJ18167.1 in Exaiptasia diaphana

Genomic Location: LJWW01000157.1:383386...409962
NR annotation: KXJ18167.1, DNA replication ATP-dependent helicase/nuclease DNA2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
D3ZG52DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus norvegicus OX=10116 GN=Dna2 PE=3 SV=1
Q8QHA5DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis OX=8355 GN=dna2 PE=1 SV=1
E1BMP7DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus OX=9913 GN=DNA2 PE=3 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003019 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13086
all species →
AAA_11AAA domainDomainInterproscan
PF21123
all species →
Dna2_RiftDna2 Rift barrel domainDomainInterproscan
PF08696
all species →
Dna2DNA replication factor Dna2FamilyInterproscan
PF13087
all species →
AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041677
all species →
DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047187
all species →
DomainUpf1-like, C-terminal helicase domainInterproscan
IPR026851
all species →
DomainDNA replication ATP-dependent helicase/nuclease Dna2/JHS1, DEXXQ-box helicase domainInterproscan
IPR011604
all species →
Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR045055
all species →
FamilyDNA2/NAM7-like helicaseInterproscan
IPR048459
all species →
DomainDNA2, rift barrel domainInterproscan
IPR014808
all species →
DomainDNA replication factor Dna2, N-terminalInterproscan
IPR041679
all species →
DomainDNA2/NAM7 helicase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887
all species →
DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0017116
all species →
Molecular Functionsingle-stranded DNA helicase activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0017108
all species →
Molecular Function5'-flap endonuclease activityInterproscan
GO:0071932
all species →
Biological Processreplication fork reversalInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10742DNA2; DNA replication ATP-dependent helicase/nuclease Dna2EC:5.6.2.3
EC:3.1.-.-
DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ18167.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples
64TPM > 0
2Conditions
5.4Max TPM
2.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole animal · aposymbiotic 36 33 2.04 3.43
whole animal · symbiotic 36 31 2.72 5.40

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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