Gene detail

Detailed information of KXJ19982.1 in Exaiptasia diaphana

Genomic Location: LJWW01000120.1:298085...305549
NR annotation: KXJ19982.1, V(D)J recombination activating protein 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ19982.1

ATGGCAAGTCAAATGGAAGCGACACGTAAATTTCACGAAGCTGAGCTCGAGAAATCTTGCCGTGTTTGTGGTTGCAACATAGGAAAAAAATACAAATATGCAATAAAAAATATCAAATTGCGACGTAAAATTTACGAAACATTTTCTGTCGAAACATCTAACGATGATAGTGAAATTCATCCACAATACTTGTGCACTTTGTGCTATGCAAAAACAAGTAAATTCGAAAAAAATGCCGAGTCGTACGTTCCAACAACGGAGATTGTCGAGTGGTCAACTCATAACCAAACAGATTGTTCTGTGTGCGAAATGTTTTTCAAAAGAAACCTTGGTCGTCGAAAAAGCAAAGAAAGAAAAGGAAGGGGCAGGCCAAGCACCAAAAAAGGGGAAAACACACACTCGAGTGAAAGCTCAAAACCACCATTCGTCATTGATGAAACTATAGTGCCAGATGCCTTCGTCGAGACCATGCCAGCGCAATGTAGATTTGTACAACTGAACGAAGAATTAATGTGTCCTATATGCCGCGAGATTCTAAACAGACCATTACAAAGCCAGTGTGAACATCATTTTTGCTATGAGTGTATTAGAAACTGGGTTGAAGTTGCAKGTGGAGATTCCGGCTGTCCCGTCTGTAAAGATCCTTTATTACTTCGTAAGCCSCCACGGTTATTAATGAATCTACTATCGTCAAGCATARTAGAATGCAGGAGTTGTAAAAGTCCATACCCTTTGGAAAACCTAGACAGTCACGAGAAACTCTGTACCAAGTTTGAAATATGCCGTAATAAGACTTCCGTATCAGACAYACTGGAAYAGCCATCATCAAAACYATTGTCGTCACAAGAGRAAATACTTACCACCCATCTAATGAAACGGAAGATAACAAACTCGACGWCTGAGAATTTATTTCTACGTACTGGTGGGACACCCATAAAAGTATCTGTTGTAAAAAAACCAAAAGTTGGGAGTAGCTTCGCTTCCAAGAGAACATTACAAAGAAGAACATCTGAGATACAAAACTACAGAGCAGTCGTAAGTGGTAGTGACAAAACGGACGTTTCCGCACAGTATTCTCAGGAGATGTCACAGTTAAATAAAAAGGAGCGACAAAAAATCATCAGAGATGCTGGAATAAGGTTGGAGGTCGGGGCGGAGGAAGGAGTGGCAATGAAGACAGACCTTGGAATACCCTGGAACAAAATAAGACACATAAGAAGGTGGCTGTCGTCATGGGGACTTGACTTATCAAGTGAAAAAAAATTAAGAGGAATTGCTGATAAACAGAAACTAGTAGAACTTCATTCTGAGAATGTCCCATTTGAGTTCAGCAAAAAAGGTGGTGGGAGGGAAGTGAGATTGGCTTCATGTGTACAGGTACTAACTCTGAAGGAAATGGTTTTCAATCATTTGGAGGAACATAAAAAATATGGAGATCTTGTTTGGCATGATGGTCTAATTCCCAGCAAAGAAATATGGCTAAAAATTGGTGGTGATAAAGGGGGTGGCAGTTTTAAGATGGTTTTTGAGATTGGAAATTTAAAGAACCCCAATTCTACAGAAAACACATGTATTTTTGCAATGTTCAATGCTTCTGATACACCATACAACCTGTCAATTGGACTTCAAGGCTTTAACATTACAGTTAAATGTTTAAATGGACATAAATGGAGGGAGTGGGAAATAAAAGTGTTTATATTTGGCGATTATGCCTTTCTTTGCACTATATATGGTCTTTCTGGAGCAAGTGGTAAACACTTCTGTTTATGGTGTCTAATTAGTCAAGAGGAAATATCAATTCCATTGAGTGAGAGAGGGTATAAAGATAAACGAACTTTACAAGGGATTGTTGACGACAATAATAAATTCCAAGCTGGAGGAGCCAAGCTTAAGAAAGCTAAGTTATACAACAATGCCATTAGACAGCCCATGTTTGCAATACCAATAGATCAGAAACCTCAGGGGAGCAAGACAAGATATAAAAGGAAAAAGAAAGAAGAAAAAGGTTGTATTGGAAAACAGGGAAAAARTGACTACAGTGATTGGTACAGACGTGATGTTGTTGAAATGGAAAGACAAATCAAGGAAAACATTGCTAAAAAGAAATCAGTTGAAAATCATWTTTATACAGTTTTGTCCAAGTACAAAAAGAATTCTGGCTTGTTTTTACATTTAAGGTATAAAACAGAGTATGAAAAAAGGGAGAAAGGACTAGATCATGACAAAGAAATCTTAAAACCAAGATTCCAGGAAGGCACCGAGTYGATTTGGAGGCCACAAATATCAGCAGAGTCAAGTGCTAACAATTCTAGTAGCAGCTCATCTGACCAGCCATGCCAGAATGAAAAGGTCACAGTTCCTTTATTGAAAAAGGCAAATTATATTGACATTGAACAATGTTCTAAGAACTGGAGAGCACTACGAATTGGAAAAATAACTGCAAGCAAGGTTCCATCCCTTCTTGGATTTAATGGTATTAAAGAATTAGTTTTTGTAAATTATCAAAGTCAGAAGATTGGTCACGCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZY9	E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens OX=9606 GN=TRIM31 PE=1 SV=2
Q8IYM9	E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens OX=9606 GN=TRIM22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000384 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12560 all species →	RAG1_imp_bd	RAG1 importin binding	Family	Interproscan
PF06918 all species →	DUF1280	Protein of unknown function (DUF1280)	Family	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR035714 all species →	Domain	RAG1 importin-binding	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR009689 all species →	Family	Protein of unknown function DUF1280	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31424 all species →	PROTEIN CBG23806	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ19982.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ19982.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

54TPM > 0

2Conditions

3.2Max TPM

0.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	25	0.85	2.13
whole animal · symbiotic	36	29	0.96	3.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.13
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.07
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.71
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.63
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.57
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.53
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.50
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.48
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.42
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.39
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.23
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.19
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.14
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.11
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.04
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.04
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.01
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.00
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.98
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.91
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.89
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.85
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.64
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.62
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.57
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.20
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.96
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.70
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.47
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.24
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.92
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.85
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.77
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.41
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.08
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.01
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.90
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.90
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.86
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.86
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.84
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.84
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.79
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.78
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.77
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.69
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.66
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.63
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.51
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.46
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.44
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.42
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.39
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.23
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.