Gene detail

Detailed information of KXJ20004.1 in Exaiptasia diaphana

Genomic Location: LJWW01000120.1:419915...431179
NR annotation: XP_020911296.1, 60 kDa heat shock protein, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18687	60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus OX=10029 GN=HSPD1 PE=2 SV=1
Q5ZL72	60 kDa heat shock protein, mitochondrial OS=Gallus gallus OX=9031 GN=HSPD1 PE=1 SV=1
P63038	60 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018370 all species →	Conserved_site	Chaperonin Cpn60, conserved site	Interproscan
IPR001844 all species →	Family	Chaperonin Cpn60/GroEL	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45633 all species →	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0008637 all species →	Biological Process	apoptotic mitochondrial changes	Interproscan
GO:0034514 all species →	Biological Process	mitochondrial unfolded protein response	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0045041 all species →	Biological Process	protein import into mitochondrial intermembrane space	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04077	groEL, HSPD1; chaperonin GroEL	EC:5.6.1.7	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20004.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

340.3Max TPM

231.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	235.48	340.32
whole animal · symbiotic	36	36	227.18	293.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	340.32
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	301.58
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	291.08
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	288.24
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	284.09
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	275.04
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	271.77
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	269.69
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	267.40
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	264.30
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	259.05
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	258.59
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	250.22
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	249.68
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	248.06
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	247.97
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	246.55
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	245.16
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	240.81
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	238.73
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	235.40
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	232.12
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	225.39
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	223.06
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	222.17
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	215.54
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	214.94
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	210.55
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	206.08
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	171.51
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.57
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.36
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	166.38
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	162.45
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.96
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.46
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	293.32
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	268.73
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	267.29
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	267.09
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	265.95
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	263.01
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	260.43
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	255.66
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	252.88
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	252.49
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	246.69
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	245.65
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	242.06
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	239.98
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	236.66
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	229.52
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	227.16
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	224.98
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	224.84
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	224.29
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	219.15
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	217.61
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	216.36
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	216.08
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	214.71
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	213.14
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	210.51
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	209.30
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	201.51
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	197.96
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	196.81
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	185.11
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	183.70
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	177.43
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	175.52
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	154.91

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.