Gene detail

Detailed information of KXJ20009.1 in Exaiptasia diaphana

Genomic Location: LJWW01000120.1:490063...502927
NR annotation: XP_020911325.1, phospholipase DDHD1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ20009.1

ATGGATGACGAAGAAGCTAATGGGACATCGACAACTTCTTCGTCTAACAAACCTCCAAGACCTCCACCACCCAATATAAAACGACCTGCTAGTATTGCCCAGCACCTTGATGCTCTTCAGGGGCTGAGGCCGGAAAAGGTTCGCTGGTTTTTCAAGGAAGATAAAAAGTGGGTTCCATTCTGTGGAAGTGATTCGCTTGCAATAGAGGAGTGTTACAGGAAGATTGATGAACTTGAGAAATGTACTCAAGATTCTGACACAGAGATACCATGTAACAGTCGTAATTTGTATGACCATCCTATAGTTAAAGGAGGACTGTTCGAAGTAGATGTTGTTGCCAAATTGTGCACACCTTTATATTGGAAAGAAACTAGCTTAGAGGTATGTAGAGGAACATGGTTCATAGGAGCTCCCAGCTCTCCTGATCTTTGGCAACCAATTACAGAGGAAAGTGCAGATCAAATAGAGAATTCACATCAGACAATATGGAGGGCAATGGGACTTCATGTAGGACCAATGGAAGAAGATAATAAAGCCAGAACAGAAGCATTAGGGAGACTCACTCTGAAAGGCTACTATGTGGAATGGAATGATATCACTGATGTTTGGTTATACTGGGATGACATCAAGTCTAGGATTATCAGAGGTGTTGGTACCAAGATTGGACTTTCCTCAGCTGCAAGTCCCCTTCATCGTGGCTATCATACTGATGCCATGGATGTAGATAAACCATGTGAAATAACCCATTTGGTGTTTGTTGTCCATGGTATTGGCCAGTTATTGAATATGAGCAACATTGTAAAAAATACTAATGGCTTACGTTCTTGTATTGGAACAGTAATCGAGAAGAAGATACCTGGCTTTCCATCTAATCAGCGTGTGGAGTTTTTACCAGTAGAATGGAGAACGTCTTTGAAACTTGACGAAGGTACAATTGAGTGTGTTACACCTAAAACTGTAAGTGGTATTCGGAACCTGCTAAACACTAGTATGATGGACATTCTTTATTATACAAGCCCATTTTACAGATATGAGATTATCAACGCTGTACGTGACGAAATAAATCGTCTCTACGATGCCTTTTGTAGGCGCAATCCATACTTCAAGGAAAAGTATGATAAGGTGTCCATAGTTGCTCACTCACTGGGTAGTGTAATAACCTACGATATACTATCATTATGGGATATTGAAGAAAGGAATTTATCTGAAAAAGAGTTACCAAGTGCCACAGGATTTCTTACTGAGAGCTTCACATTCCTTAAAACTTTAGCCAGTCAAGAAGAACTGCAACCTTCGAGTTCTTCGAATGAGTTTTCTCCAACTTCATMTAAGATAGAGAAGAACAAACCCAAGGAAAATATACGCGCTGAACTAGCAAAAGCACGGAATAACGTCATGGAGTTAGAAGCTATGTTAAAAGCTACACTAGAATTTGACGAAAACAAAGAAAACCCTACAGGGGATTCAGACTGTCCATATGCTTTACGTTTTAAGATAGAAAACCTTTTCAACATTGGTTCTCCTCTGGCGGTGTTTTTGGCTCTTCGTGGTATCCGTCCTCAAGATGACGTTGAAGATCATGTGCTTCCCAAGTCTGTTTGTAAGAGAATATTCAACATTTACCATCCTGCTGACCCAGTGGCCTACAGATTAGAACCTCTTATTTGTGAGGACTACGTCTCCATCCCACCAATCAAATTACACCGTTTTGATCAAACTAAAATTGGTTATGCTCAAGAAAACAAGCCCCCGAGCTCGGAAACCAAGAGTTCTTGGAGTCTCTTTAATTATCGAGCTGGATATAGCAAACAGAAGGAAAATTCAGAAGACAGCAGGTCAAGGTCTGCATCAATAAGCGACGGAAGTGATCAACCAGATGAAGAAATTGTCATTGTCGACCACGCACCTGGACCCGAGTTTCTTAAAGGTGAACCAAGCAAGGAAACAGTAYCTGAAAAGAAAGGTGGGTGGATGTCCAGTTGGTTTGGATCTAAACAACCAAAGAGYGTTGATGAACAGGACGGTCGAAGTGACCCTGATGGAGCAGAAGGATCGYCYAAACAAAAAAAGTGTGAGCATATTGTTGTACCTAATAAAGTAATGAATGAACGTCTGGATTAYGTCCTCAAAGAAGGTTACATGGAGAATAACTACCTCTCTGCCGTAACTTCTCACATTTCATACTGGGGATCGTGTGATGTCGCAAGATTTATCTTGGAAAACTCATTGGACTGTGAACAGGGAGATGTGGGCTCAGATAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46606	Phospholipase DDHD1 OS=Bos taurus OX=9913 GN=DDHD1 PE=1 SV=1
Q8NEL9	Phospholipase DDHD1 OS=Homo sapiens OX=9606 GN=DDHD1 PE=1 SV=2
Q80YA3	Phospholipase DDHD1 OS=Mus musculus OX=10090 GN=Ddhd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004564 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004177 all species →	Domain	DDHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23509 all species →	PA-PL1 PHOSPHOLIPASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13619	DDHD1; phospholipase DDHD1	EC:3.1.1.118	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20009.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

123.9Max TPM

49.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	51.37	123.92
whole animal · symbiotic	36	34	47.70	70.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.92
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.43
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.29
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.10
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.66
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.38
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.61
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.32
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.30
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.24
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.83
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.25
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.21
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.47
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.16
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.67
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.64
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.35
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.21
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.06
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.68
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.99
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.62
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.43
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.17
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.54
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.47
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.30
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.57
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.34
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.95
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.51
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.77
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.73
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.98
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.41
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.35
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.84
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.23
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.66
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.90
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.17
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.36
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.49
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.01
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.19
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.49
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.34
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.01
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.04
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.85
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.79
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.95
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.43
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.14
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.97
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.84
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.88
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.86
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.61
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.54
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.17
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.15
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.70
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.85
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.40
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.63
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.04
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.