Gene detail

Detailed information of KXJ20106.1 in Exaiptasia diaphana

Genomic Location: LJWW01000118.1:378781...389392
NR annotation: KXJ20106.1, Vacuolar protein sorting-associated protein 51-like [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ20106.1

ATGCTTGTTTGTGAAGATACTGGAGAGGAGCTAGACGCTTTAAGGCTGATTTACAYGGCACGATTGTCTTGGTGCACGGATTTCGAAAATACCGATAGAGCAAAAAGGTCTATTACAACATGTCCACCTCAAAACAGTTCAACCTTATTTAGTAAAATTTTTAACTCTTCAGCYGAGGAGCCAGAAGATGCTGCTCGTAATAGACATCGCCAAAGGCGTGGCCTCCTTAAGATGTATTATGGGGTTGGTGAGGAGGGGGGTAAGACTACGACTATTGACCCATGTGATATCAATGGTGCTCATTTCAAACCTGAGACTTACTTAGAAAAGACTTTTAAAGAAAAATCACTCACAGAACTCATGGATAAAGAAGGGGATATTACGAAACAGATCAGAGCCTTGGATAGTGATATGCAGACWCTTGTTTACGAAAACTACAATAAATTCATCAGTGCAACAGATACTATTAGAAAGATGAAGCATGACTTTAAAAAGATGGAAGATGAAATGACAAAACTCAAAGACAATATGACAGCCATAACAGACTTCAGTGAAAAAATTAGTGGAACTTTACAAGATAAACGACAACAGATCACAAAACTTTCTGGTGTTCACTCACTTCTAACTAAGCTTCAATTTTTGTTTGAGCTGCCATCAAGACTGAAGAAATGTGTTGAAATGAAGCAATATGGCCTTGCTGTCAGATACTACACTAAAGCAAGGGATGTCCTTCATCAATACAGTCACATGCCATCATTTTATGGCATCCATCAAGATTGTGATGAGATAGTAAAGGAGCTGATTGTGAAACTGAGAGAACAGCTAAGAAATCCAAAGTCAACACCAAAGCAGTTGGCTGAGTGTGTGGATTTACTGCTACAACTTCGTGAACCTGCTGATGAGTTATGTGATGAGTTCATCATGCAAGCCAGAGAAAGACTAGATGAGAACCTCAGAGTTTTAAAGGCGCAAGTGGAACTAAAGAAAATTGAAATSACTCCCAAAGAAGAACCGAGTGATGCTTCTTTTGATGAAAGGCAGCAACGACCTATGGATTTCCTTGAATTCATTGATTGTGGCTGCAATGGATTTTTGAGTACAGTTTGCCTAGTAATAGCATCTTACAAAGAACAGTTTGTAGAACGACAAATGGCAGATCACGTTACAGACCCAGAGGAGCTTGAGAAAGTTGTTTCGCAAAAGCTGTCRAGTTTTATGCAGAAGCTTATGGGAGAATATTTTAAAATTACAGAATCAAGAATTGAACTTGAGACTGATACMGGCAATAATGTTCTTCTTGTGAGAGCGCTGGATCGATTCCATCGTCGTCTTCAAGCTGTACACAAACTTCTTCCAGACATCGGCTCAGGCAGGCTGGGAGCCAATATCATCGCACGTGCTGCACATAATCGAGTGATATTTTATACCCAAAACCTTCGTCAACAATTTGCAGTTTGTCTCACTGATACTCGCCAAGACTTGGCTGCTTTACCGCGACAAACAGGGAAGGATAAAAACAATGTGCTATCAGATCTTTTAACACAAACTAGCAATGCCATCTTGGATCAAGTTAAAACTGTACTTAACTGTCTAAAAGCATTTATTGGTCCAGACATCACATTCTCCGTCAAACCATACTTCAGAGGTCCGTTTTGTGCTGATGACGTCAGGGAAGGTTTGGTTGTGGATTTTATACGTCATGTATTACAAACTGCAAAGGAACTATGTGACAAAGTGAGTTCTCCACCACCGTCACTTGTCCTTCTTCTATCTCGACTTTGTACGGACTTCCACGAGTCGACCATTACTTACGTGTTAAGTCATACGGATGGCCAATTTCCAATTGACCAAGAACTTCATCGAGGCTGTGTTAGAACACCAGTTGCTGACCTGATAGCTGAGGCAAGAACTATAGCTCAGGACCTACTTAATCATTATGTGAAGATTCAAGGTCTTGTTATCTCTCAGATGATAAGAAAGAGTGTCGATACACGTGACTGGTTGAATACTATTGAACCCCGGAACGTACGAGCTGTAATGAAAAGAATTGTTGAAGATATCACAGCCATGGACACGCAAGTTGGTCAGCTGTACGAGGAGGGCGCAAGGAAAGCCCATAGCTCAGATTCAAGCAAATTCACTTACACGTACTCTAATCAGACAAAACAGAATCGTACACAATTTAGCTACACAGCGAGCACCGGCTTTGATTCCAGCCTTCTCAGCAACATACAGAAACTGTTCTCAGAAAAGATTGAAATCTTCAGTCCGGTAGAGTTCTCCAAAGTGTCTGTCCTCACTGGAATCGTCAAAATAGCCCTCAAGACTCTATTAGAGTGTGTCAGGCTTCGCACATTTGGTAAATACGGTTTGCAGCAGATCCAGGTGGATACTCACTATCTTCAGCTGTATCTGTGGCGGTTTGTTTCCGATGAAAACCTTGTTCACTTTCTGCTGGATGAGGTCGTCAACAGCGCTGTTAACAGGAGCGTCGAACCAGAATTAATGGAACCGAGTATTGTTGAAGTGATCTGTGATCGGGGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q155U0	Vacuolar protein sorting-associated protein 51 homolog OS=Danio rerio OX=7955 GN=vps51 PE=2 SV=1
Q505L3	Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus laevis OX=8355 GN=vps51 PE=2 SV=1
Q4V9Y0	Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus tropicalis OX=8364 GN=vps51 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15469 all species →	Sec5	Exocyst complex component Sec5	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014812 all species →	Family	Vacuolar protein sorting-associated protein 51	Interproscan
IPR039481 all species →	Domain	Exocyst complex component EXOC2/Sec5, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15954 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990745 all species →	Cellular Component	EARP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20296	ANG2, VPS51; vacuolar protein sorting-associated protein 51	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20106.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

133.1Max TPM

23.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	22.77	133.05
whole animal · symbiotic	36	34	23.95	38.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	133.05
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.23
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.36
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.03
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.56
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.75
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.37
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.18
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.15
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.93
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.57
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.48
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.37
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.32
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.05
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.80
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.42
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.07
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.91
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.45
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.44
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.31
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.94
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.85
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.35
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.76
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.73
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.82
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.35
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.67
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.68
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.05
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.74
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.13
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.95
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.68
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.29
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.07
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.87
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.39
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.21
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.95
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.72
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.35
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.34
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.56
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.17
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.96
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.65
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.53
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.51
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.50
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.01
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.93
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.80
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.42
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.37
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.35
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.31
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.60
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.38
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.90
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.84
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.37
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.72
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.31
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.26
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.