Gene detail

Detailed information of KXJ20171.1 in Exaiptasia diaphana

Genomic Location: LJWW01000116.1:178585...191477
NR annotation: XP_020907089.1, bromodomain-containing protein 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ20171.1

ATGGTAAGCATCCGAGAGTTGATTGATAATTTACGCGCAACAAAGCCGCCATACGAGTGCCCTTTGTGCCAAAAATTCTACAAAAGCTACAGCGGAATTGAGTATCATTTGCAGAACTTTAAACACGATGGAACAGACGCTCCTCAGCCTCCAGCTTCGTCCAAAAAGAGTAAAGGAAGGGGACGCAAAAGCGTCAAAACAGGCAAAAATAAACGACCTCCCCCATCGCCGCCTCAGGTTGTTGTTCGGGAAACTCTTACTTACGCTCAGGCACAACTCATTGTGGAAGTGGAATTAGATGGCTTAGTCCAAAGAATCGGCATCGATGACAGCCTTGAAGTTCTTGACGAGAATAGAGATCAAGAGCCAGAGAATAGCATAACTTCGATTGAACATGAAACTCCGAAACCCGTGTCAAAAAACAAAAACAAATCCACGAAAAATGATGCTGAACGGACGCCGGCTCTTCCGAAACCCGATTTTGTTGATAGAGATGATTTTCGTCATCCCGATGCTCCAGCAAGACCGACTACGTATTTTCGATTTATAGAACAAACTACAGAGGAAATGGATGAGAATGTTGAATACGATATGGACGAAGAGGACTACAGTTGGTTGGATTTGATCAATGACCAACGAAAGTCGGAAAATATTACCCCGGTCTCCCAAGAAGTGTTTGAAAATTTAATGGATAGATTGGAAAAAGAATCTTACTTTCAGAGCCAAACTACCTGTGATCCAAATCAGTACATTGATGAAGATGCTGTTTGCTGCATCTGCAATGATGGAGAATGCCAAAATAGTAATGTGATTCTATTCTGTGACATGTGCAACTTGGCCGTGCATCAGGAGTGCTATGGAGTCCCATATATTCCCGAGGGACAGTGGCTGTGCAGACGGTGTCTGCAGTCACCATCCAGAGCAGTGGACTGTGTCTTGTGTCCCAATAAGACTGGTGCATTCAAGCAGACTGATGATGGCCGGTGGGGGCATGTAGTTTGTGCACTGTGGATTCCTGAAGTTTGCTTTGCAAATACTGTTTTTCTTGAACCTATTGACTCAATAGAGAATATCCCCTCAGCTCGCTGGAAACTAACATGCTATATCTGCAAACGTCGCCAAGGAGCAAGCATTCAATGCTTCAAAACAAACTGCTACACTGCTTTTCATGTTACATGCGCTCAGCAAGCAGGCTTGTTCATGAAGATTGAGCCAGTGAAAGGGGAAAATGGACAACTGACTGTTCGCAAGACAGCATACTGCGATGTTCATTCTCCTGGACACCTTGGCGAAGAWAAAGACCTTGATATGGACAGTGAAGAGAAACTTYTACCTGTTAAAAACAAACTTGCAACAAAGAATGGAACTTCAAAGAGGAGYATCAAGAAGTTTAGAAAGCTTTTGGCCGAAAAGAAGACAATGCCGGTTCCTGTAGTAAACATCCCATTTATTCCATCGCACAGGCTTGGAAAGATTGTTAGTAAAGTTGCCATGGCACGCAAAGCTCAGTTTGTTCAGTCGTTGCAGAGTTATTGGATGCTCAAACGGCAGTCTAGAAATGGTGTCCCCCTTTTGAGGAGGCTGCAGGCGACCCATCTCAGTCAAAAAGGAGGTGGRGAYGAGTCCAGTGAAAGATCAGAGAGGATTAAAGCTATGAAAGAGCAACTACACTTTTGGCAGAGACTTCGACATGACCTGGAGAGAGCTAGACTGCTTGTTGAACTGATACGGAAAAGGGAAAAGTTGAAACGAGAACATGTGAAAGTCAAGCAACATGTTGTGGACCTACAGTTGCAGCCATTGAACMTGGTAYTGAGAAAGGCTTTGGATCARATCCAGACYAAGGACCCTGGGGATATATTTACTGAACCAGTTGATCCAAATGAGGTACCAGACTACCTTGATGTYATAGACCAACCTATGGACTTCTCTACCATGAGAACAAGAATAGAATCCAACCACTACCATACAATAGACCAGTTTGAGGCTGACTTCAATCTCATCATTGATAACTGTATGCAGTATAATGCRCCAGATACAATCTATTACAGAGCAGCSATCAAGCTCAGAGACCAGGGAAGACCGATCATTCGCGCTGCTAGAAGACAAGTCGAGCGAGCAGGAATTGATCCGATGACAGGGCTTCATACAAAAGAGCCACCCACTTTGGCYGATAGAGAACCAACAGAGGAAGATTTCATTTTGACAGAAGAGCAACGCAAGGAYATGAGTCTAGAGGAACAACTCAAGGACTTGACCGAGAAACTTGACATGACCCAAGCCATCAAACATGGAGGTGTAAGAGCGACTAGAGTTAGAATGTTACGCAAAGAAATGGCGCTTGTGAGAAGAAAGTTGAACCAGGAAAGAAGACGTTTCTCAGAATCAAGTGGTGGTAATATCAATGACGATCGATTTTCAAAGTCCTTCGAGTGTACCAGTGAAGATTCAACGAGTGAACCACCACCGATCAAGAAGCAGAGACTTGAGGAAACCTCGGTTCACCATGATGGAGATGTGGTCTCTGCGCATGCTCATGGATCTGTAACCACTGAGCTCAAACCAACGCCAGACTCGTCTGTTTCTACTACAACAACCAACCCAAGTCCCGGAATGAGYCGTCGCAGTGGAATACTTTTCAACAAGGGACGAAGTCGTGTACGACGGAACTTAAACGCCTCGACCGAGAAGTCTGGGAACGAAGTGACGTCAGTACCAAATCACGTGCTTCAACCGGTCAATCATGAAAAGAATACGGAAATCACGGCCACGGAATCGCAAGTCACGCAGAATCACAGAACCGACATGATACGTAACACCGACGTGTTTCTTGAGGARAARACCGCTGTRAARGAGCCCGTTACGCATAAATGGCGTAACGACAGCGTTAGCAGTAACGAGGGTACGTTTACGCATAGAAAACCCTACAAAACAGAACTTGGGAAACTTATAGAAGACGCAACGTCGCCGCTCTACGACTCGCACAACGACAAGCTRAGTTTCTTCGCCAACGGCCTTCGACAGAGAAATTACAGAACGTATACCAGCGAGTCAGAGTCGGACAACACCGAAGTTCGAGCGAACGGCGGTCGACAGAGACGAATAGGTCGGATGTTCTCGTCGGTTTCCGAAGACGAACAAAGCACGACGGATACCGAAGTGTGTGCGTTAGAAAACAGGGYGGTCAATGGTCCTGTCGAGAAAAAGAAACGACAACGAAAGACGACTACGGATTCAGATATGGATTTGACGCCGTTAGAGCCGCTTGAACTGGTGTGGGCAAAATGTCGTGGGTACCCATCTTATCCTGCCTTGATAATTGACCCGAAGACCAAGAAAGGACTTGTTTATAACGGRATACCAATTCCTGCTCCTCCTGARGATGTCATGAGAGAGAAATCAGTCACCGATGACTCGCTGTACCTCGTTTTATTCTTCGACACTAGACGGACATGGCAATGGCTACCTCGCCATAAGCTGGAACTCCTAGGAATCGACCAAACACGAGACGAGAGTAAATTACTCGAAGGGAAAAAACTATCCATGAAGAAATCAGTACAGCACGCATACGAACGAGCTCTCATGCACCGAGACCAAGTGGAAGCAGGCCGAMGAAGTTTGCAAATGAACGATGACGAAGAAGACAATATAAGCGAAAATGGTTTCGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55201	Peregrin OS=Homo sapiens OX=9606 GN=BRPF1 PE=1 SV=2
B2RRD7	Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1
B2KF05	Bromodomain and PHD finger-containing protein 3 OS=Mus musculus OX=10090 GN=Brpf3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004951 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan
PF10513 all species →	EPL1	Enhancer of polycomb-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR042008 all species →	Domain	BRPF1, PHD domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR019542 all species →	Domain	Enhancer of polycomb-like, N-terminal	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070776 all species →	Cellular Component	MOZ/MORF histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11348	BRPF1; bromodomain and PHD finger-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20171.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

75.7Max TPM

40.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	35.52	71.39
whole animal · symbiotic	36	36	46.30	75.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.39
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.68
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.74
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.61
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.38
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.88
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.31
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.29
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.56
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.17
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.03
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.83
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.65
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.52
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.38
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.61
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.12
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.87
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.72
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.48
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.01
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.60
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.44
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.30
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.16
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.16
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.81
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.73
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.16
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.87
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.77
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.11
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.85
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.85
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.41
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.44
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.75
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.70
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.44
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.64
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.96
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.77
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.76
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.38
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.78
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.55
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.77
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.64
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.23
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.10
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.99
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.28
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.91
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.15
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.97
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.69
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.99
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.36
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.53
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.39
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.37
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.28
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.86
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.37
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.32
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.15
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.72
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.12
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.08
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.69
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.30
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.86

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.