Gene detail

Detailed information of KXJ20344.1 in Exaiptasia diaphana

Genomic Location: LJWW01000114.1:325652...331373
NR annotation: XP_020905110.1, alpha-tubulin N-acetyltransferase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CX6	Alpha-tubulin N-acetyltransferase 1 OS=Bos taurus OX=9913 GN=ATAT1 PE=2 SV=1
B3RNE8	Alpha-tubulin N-acetyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53139 PE=3 SV=1
Q767K7	Alpha-tubulin N-acetyltransferase 1 OS=Sus scrofa OX=9823 GN=ATAT1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006257 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05301 all species →	Acetyltransf_16	GNAT acetyltransferase, Mec-17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038746 all species →	Family	Alpha-tubulin N-acetyltransferase	Interproscan
IPR007965 all species →	Domain	Gcn5-related N-acetyltransferase (GNAT) domain, ATAT-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12327 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019799 all species →	Molecular Function	tubulin N-acetyltransferase activity	Interproscan
GO:0071929 all species →	Biological Process	alpha-tubulin acetylation	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19573	ATAT1, MEC17; alpha-tubulin N-acetyltransferase 1	EC:2.3.1.108	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20344.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

39.4Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	9.33	39.44
whole animal · symbiotic	36	30	8.80	13.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.44
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.37
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.86
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.83
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.22
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.88
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.19
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.98
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.96
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.93
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.87
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.70
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.64
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.46
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.45
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.43
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.08
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.60
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.49
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.48
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.44
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.42
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.33
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.27
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.15
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.07
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.00
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.94
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.84
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.09
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.06
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.76
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.75
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.81
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.19
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.88
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.73
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.63
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.48
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.94
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.75
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.56
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.31
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.18
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.16
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.06
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.69
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.43
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.23
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.07
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.91
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.70
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.69
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.66
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.65
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.65
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.39
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.20
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.85
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.38
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.33
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.72
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.51
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.