Gene detail

Detailed information of KXJ20439.1 in Exaiptasia diaphana

Genomic Location: LJWW01000112.1:6407...11176
NR annotation: XP_028515524.1, tropomodulin-3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JNC0	Tropomodulin-1 OS=Bos taurus OX=9913 GN=TMOD1 PE=2 SV=1
Q9NYL9	Tropomodulin-3 OS=Homo sapiens OX=9606 GN=TMOD3 PE=1 SV=1
O01479	Tropomodulin OS=Caenorhabditis elegans OX=6239 GN=unc-94 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002197 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03250 all species →	Tropomodulin	Tropomodulin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004934 all species →	Family	Tropomodulin	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901 all species →	TROPOMODULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005523 all species →	Molecular Function	tropomyosin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051694 all species →	Biological Process	pointed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10370	TMOD; tropomodulin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ20439.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

71TPM > 0

2Conditions

147.2Max TPM

94.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	81.60	120.49
whole animal · symbiotic	36	36	108.19	147.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	120.49
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	107.21
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.86
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.62
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	101.01
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.77
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	97.39
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	96.98
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	96.82
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	95.06
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	94.37
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	93.23
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	91.17
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.93
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.63
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	87.33
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	85.67
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.68
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.57
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.91
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.42
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.87
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.22
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.01
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.20
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.92
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.35
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.27
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.03
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.86
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.10
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.44
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.82
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.56
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.70
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.25
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	140.70
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	138.75
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	134.20
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	133.96
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.27
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	124.03
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	117.54
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	117.31
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	117.10
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	115.64
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	113.78
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	111.80
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	110.88
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	110.37
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.61
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	107.76
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	104.99
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	104.62
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	104.01
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	103.96
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	103.59
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	102.81
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	102.41
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	102.12
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	101.62
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	100.97
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	99.94
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	99.64
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	99.35
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	96.67
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.44
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.60
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.77
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.21
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.14

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.