Gene detail

Detailed information of KXJ20816.1 in Exaiptasia diaphana

Genomic Location: LJWW01000105.1:29183...42266
NR annotation: KXJ20816.1, ATP-dependent helicase brm [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ20816.1

ATGACCCTTAGCATGGGGCACGATTGTGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGCTGTCAATCATGTCCATGATGATGAAACCACCTATTCCTAGTTTTCCATATACTCCTGAAAATGTCCAGAGACTCGAGAAGGCTTTGCAAGCAATGCAGGAAAAGGGGATGGAAAATGACCCWCGTTATGCACAGTTGTTGTCACTCATGCAAGGGAGACCYCCCATGATGGAGGATAACTCTTACAGCATGGGTAACATGCCGACAAATGCCCCACCCATGCATTATGGTGATGCTGGCCCAAGTWATGTACMAGGGCCATCAAGCATGCCAGACCCAAGTCAAAGAGCTTCTCCGGCTACAGTACCTGGACAAAAATCTTTTAATTCTCAGCAGTTGCTCCAACTACGAGCACAAATTATGGCTTACAAACTGATTTCCAGGAATCAACCATTACCAGATCATATCAAGATGGCCATGTTGGGTAAACAACCATCCAAGATGACAATGGTTCCTGGAAATTCCATGACAAGTGGACCAGGAAATTCCAGTCAGACAACTCCACAAGCATCAACCCCACAGACACAGGCCTCTATAGCTAATACTTCTACGCCATCTGCTAGTATAGCACCCAACCAGACTGCATATAACGTACCAGGAATGACTCCAGCACAAAAGATTCAAGGCAGCATGAATAAACCAACAGGAACAAGCAACAACCAGACATCCATGGCGGCCGCTAAGGGAGCTGCTGCTAGYGCAATCGCAGCCGCYAACCAGCAACAAAAACTCAAAGAACAGCAGAGGCAAGCATTGGCATTACAGCAGCAGCAACAACAATCGCAACAACGCAAACCACAACCTCACTTGCAGATGTCTAAGTCACAGCTAGCTCCTGTTACGAAGCCAACAGGTCTTGATCCTGTAGCGATATTGAAAGARAGGGAGAATAGAATACAAGCAAGAATTGTGCAGAGGATCAAAGAACTTGAAGGTCTTCCTGGAAATTTACCAGATGATTTGAGACTCAAAGCCATGATTGAACTCAGGGCATTGAGACTACTGAATGTTCAGAAGCAGTTGAGAAGTGAAGTTATAGCATGTACAAGAAGAGACACTACACTAGAAACAGCACTAAACTCTAAAGCATATAAACGCAACAAGAAGCAGTCCCTCAGAGAAGCAAGGATTACTGAGAAACTGGAAAAACAACAGAAAATGGAACAGGAAAGGAAGCGCAGGCAGAAACACCAGGAATACCTCAACATGATTTTACAACATGTCAGAGATTTCAAGGAATATCACCGTCTTACAAAGATGGTCCAACAGCACTTTTTTTACCATAAGAAGAAGCAAAAGGGAAGAGTTCGACGCAAGTCAGACTTTTTTTATGAGACTCCTGAGGGTGACAGACGCGTCACTGTTGTAAATACAGAGACAAATGAAGTTCTCAAGGGTGATGAAGCTCCAAAGGCAGATGAGCTGTTTTTTTGGCTTGCTAACCATCCAGGCTACGCAGTGGCTCCAAGACAAGAAGATGATTCAGCTGATGAAGACGACGATGAAGAAGAAGATGATGAAGACACAAACCTTTTTTTAATGTCATGGCAAAGGTTATCTGAGAAAGAGAGACGTAGAGAGATTTTTTTCAAAGATGATGTAGGTGAATCGGCGGCAGCTCAAGAAGCTGTCAACTACTATGGAATGGCTCATACTGTCAAGGAATCCATCATTTTTTTGCCTTCTTTACTAATTGGAGGGASATTAAAGGAATATCAGCTTCTTGGTTTGGAATGGATGGTTTCTCTACATAACAATAATCTAAATGGAATCCTTGCGGATGAGATGGGTCTTGGGAAAACCATTCAAACAATTGCCTTATTTACATACTTGATTGAGATCAAGAGACTTAACGGACCCTTCTTGGTCATTGTCCCATTATCAACTCTTTCTAACTGGGTTCTTGAGTTTGAGAATTTTTTTCCTTCAGTGATTGTGGTCAGTTATAAGTGTTGCACATCGCTAGACCCTGGCAGGATTGCCCACATGATCGTCAGGCGTAGAACATGTGCTAAAGTAAAAYCCAGGAATTCGCTAACACCATTAAAACACTTGTTGTTTGATGAATGGGGTTTGATAGTAGATCCTGGGACATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
P51532	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Homo sapiens OX=9606 GN=SMARCA4 PE=1 SV=2
Q3TKT4	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Mus musculus OX=10090 GN=Smarca4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002797 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07529 all species →	HSA	HSA domain	Family	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF07533 all species →	BRK	BRK domain	Domain	Interproscan
PF08880 all species →	QLQ	QLQ	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014012 all species →	Domain	Helicase/SANT-associated domain	Interproscan
IPR037259 all species →	Homologous_superfamily	BRK domain superfamily	Interproscan
IPR014978 all species →	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR006576 all species →	Domain	BRK domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799 all species →	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ20816.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.