Gene detail

Detailed information of KXJ21285.1 in Exaiptasia diaphana

Genomic Location: LJWW01000098.1:70746...78918
NR annotation: KXJ21285.1, Ubiquitin carboxyl-terminal hydrolase 38 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ21285.1

ATGGACCAGATACTAAAGGGAATAGTTGCGTCGGACCATCCCGAATCCGTCAAAAAATCATTAATTCAACAGCTTGTTTCTAAGGCAGCCAACGAAATCCCGGAAGAACAATGTGTGTCTATTTTCGAGATGAGCTCACTATGGATGTCTGATGGAAATTCAGAGTTTCTCAGTGACAGCGGAAAACTTGTTCTCTCTTCTTGGGGAAAACACCATAGAGATGTCTTTCAAAGATTTTTTACAGAGGATTATTTGGTGCGTTTTCTAGATGACGCTGACAAATTGACGATCGGGTCGGTGAACTACGTGAGGACTGCATTTGATTTACTACAACACACTCCACAAATTTTTTCTCTCTACACAATTATTCGCCATCGTGCTACTTCATGGATCAATATTAAAGCAGACATTGACTTCAGTGCTGCTGTGTGTCGCCTACTGATTGATTACAACCATTGCTGGCCTGTAGGAGACCATTTAATTCAGACATGCTTCGCTTTGGTCAACTGCTTGAGCAAAACAGAACTTCCCAAATCCTCAAAACAGGAGCTCAAAAGCTGTATCCGAAATGCCGGTACGATAGCAGCTTTGCTCAACCGTATATGGACCAAGAATCAGAATTTTATTTTTACCGTTTTAACGGAGTTATTCAAGATTATTTCAGCCCCAGGACCTAATCCCTCTGTTGCTCTGGGTTCAATCGCACAATTTTTTTCCCCTGAAGTTATCGATACAGCAACTAATATGGTAGCGAGGAGTCCTACGGTGTCAGATGATAATCTTTCATTAGCTCTGTCTCGTATGATTAGCTGGCTTTCATGGCCAGGCGGCAAGCGAGTCGACCAATGGATAATATGCTTTTTAAGGGCATTAGCCATAGCGGGAAAGCATTCTATATTAATACAAGTAACATTGGAGAAACTTCCTCAGGTTTTCAGTCGTTTGTTGTTTCCAATGGTCAGAGAGAGTACAATGGCTGTGTTATCACATATGCTACTAAGTTTCCAGCACTCGCCACAGGCATTCCATCTGATTGTGGAACATGTGCCTGACCTGGTGAAGACYCTCAAGAAAGAGGACAGTGTTTCTTCACAGTCTTGTCTTCAGACATTAACTGAACTGGTTCACTGTTTAATGTATCGACACTCAGGTTTCCCTGAATTGTATGGACCAGTCTTGGATTGTCTACAGGACTTTCATAAACCATCAGAAGCAATGATCAAGAAATGGCTGACACAAACAGCATGGGCAGCTCAAGCCATTCACATGAACTTAGCTAGAGTGACTCCCAAATCAGAAACAGGACGAACTGGACTTGTGAACCTTGGCAATACATGTTACATGAACAGCATAATACAGGCATTATACATGCTAGATGACTGTGTGGTCGATCCTTGTGGGACAGTGGTTAACACATCATACAAGTATACCAAGACTGTGGGAGCAACAGTGAATGCAAGAGAAAAAGATGGTTTAACTCCACTACACCTTGCTGTCTATCATGGATATGCAAAGTGTGTAAAAATATTGATTGAATACGGAGCAGATGTTAACAGTACTTCCAGATTTGGAAGTACACCTTTGCATCAAGCTGCTTACTTTGGTCACCTGACATGCGCCCAGGTATTGCTACAGAATGGTGCTTTAGTCGGTGTCGAGGAAGCCTGGGGACAAACCCCATTGTATTTAGCAGCACAGAGGGCACATAGTAATGTTATTCAACTATTATTGGAATATAATGCATCGGTGATACAAACAGATAAAGCGCATTATAAGACTGCACTCCATGTTGCATGCGAAGCTCAGAGTATTGCATGTGTGCAGTTCTTACTGGATGCTGGTGCTAGTCCCAATGTACAGTGCAGCAGCGGTAGGACACCTATGCATGAAGTTGTAACTGGCGAAGAAGTAGAAGCACTTTCATATTTATTGATAGAGTACGGAGCAAGATGTGACATACAAGATCAGAACGAGTGCTCTGCCATTAACTGTCTGGAAGGCTTAGTGCTTAGGTATTCAAATTCTTCAAACATTGAACAGTACAACAAATACCAAAAGTTACTTGGATACATCCACAAAACCCAAGGTCAACCCAAAACATTGATGCAAATGTGTCGTATTGAACTTCGGCGTCATCTTTCACCTTCAAATTTATACATAGTGACAGAGCTTGACATCCCAGAACGTCTTAAGAACTATATTTTATACATTGTTCATGACAAGTCAGTATCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NB14	Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo sapiens OX=9606 GN=USP38 PE=1 SV=2
Q8BW70	Ubiquitin carboxyl-terminal hydrolase 38 OS=Mus musculus OX=10090 GN=Usp38 PE=1 SV=2
Q9P2H5	Ubiquitin carboxyl-terminal hydrolase 35 OS=Homo sapiens OX=9606 GN=USP35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007708 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF21246 all species →	Usp38-like_N	Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain	Domain	Interproscan
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR049407 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24203 all species →	ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ21285.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.