Gene detail

Detailed information of KXJ21529.1 in Exaiptasia diaphana

Genomic Location: LJWW01000095.1:193116...196716
NR annotation: KXJ21529.1, Transcription elongation factor SPT4 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZ97	Transcription elongation factor SPT4 OS=Xenopus laevis OX=8355 GN=supt4h1 PE=3 SV=1
P63271	Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1
Q3SYX6	Transcription elongation factor SPT4 OS=Bos taurus OX=9913 GN=SUPT4H1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009629 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12810 all species →	Gly_rich	Glycine rich protein	Family	Interproscan
PF06093 all species →	Spt4	Spt4/RpoE2 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038510 all species →	Homologous_superfamily	Spt4 superfamily	Interproscan
IPR022800 all species →	Domain	Spt4/RpoE2 zinc finger	Interproscan
IPR029040 all species →	Homologous_superfamily	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	Interproscan
IPR009287 all species →	Family	Transcription initiation Spt4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12882 all species →	SUPPRESSOR OF TY 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0034243 all species →	Biological Process	regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ21529.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.