Gene detail

Detailed information of KXJ22010.1 in Exaiptasia diaphana

Genomic Location: LJWW01000087.1:391146...401970
NR annotation: KXJ22010.1, Alpha-protein kinase 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ22010.1

ATGGAGATATTCCAGCAATCTATAGTTCAAATTGAACCAAGTGACTTCAACCCAGAAGCCCATGAACAAATATGGCAACTGGATTTAAGCAGCGACTTTCAAAGTATTTTAGAGACCATAAGGAACAACAAAGACACCTCTCGAGTCTACTATATTCATGGAGAACCTGGAAGCGGTTGCTCAACATTGCTGCAAGGTCTTTGCCAGCAGCTCTGCAACACTAATKTTGTAAARGAGTCAGAAATATTGTTTCTTTCTCTGAATGAAGGCTGTCGTAAGGCATTGTTTTGGGAATTTATGTCAAAGTTAGCCAAAAAGAAAAATGATGCTGAGAAAGTGTCCTTATTCTCTAAATCATCAGTCAACAAAGATCTGAAGAAAGAAGGTCTTGTTGAATTCTTTGAGGATCACTTTAAAGTCATATGTATTGATAATGGAGATCTATGTCTTAAGTTTATTGATTCCTTTCTTGGTGAAGTCTTAAAGACATGCAAGATCACAAGTGTTTTGGTAATTGCTAGCCAAACAGACAATGATAGACCTTCAGATGATGTTTTGTCCAATGTAACMGTCAATGGTCTTTGTGATTCTGCTGCAAGAAACTTATTCTCTACTGAACTACAACAGTTAACACTAAAAGACGATGAACTATCTAATCTCTGTGATTTGGTCAATTGTAATCCTGTTGCAATACAACTGGTCTGTGCTTTCTTGAATAATCAAGAAGAAAATGACAGTCTGTCTGTATTAGAATGGACTGACACTGCAGGGCAGAAGTCATGTGTCTTAGAGATGGTGCTCAGATTGACCAATAAGCATCTGAAGGCTTCAAGTACTGGAATACTTTGCGAGCTATGCTTTCTTCAGCAGCCTCTTCCTKTGTTAAATATGCCTCCTGTATTAGAAGAACTAATTAAGTTAAAGCTACTTAGAGTTCAAAACAAAGAGGAAATACAATGTATCCATCTTCCTTCTACGTTGAAAAAGTATTTGAAATGCCAGAAAGATTTGTACAGTGAACCTGAYATWGWATTTGATGTTCTTCATCACTGGTTRAGTCTGGTTTCCAATCAAAAACTRCATTCACTGATTAAAGAAGCTGAAGAGCATGCCTGGCCTTTTGTCCCTGAGTCATGGCAATTCATTGATGACAAAGATGTTGGAAAAAATGAAAGCTTTAATGTRAAAGAGCACATCATTTCCAAGAATGTTCACATGCCATCACTCACAGAACTSCAGATTCTCCATGAATGTTTGTATCATGCATATCTGCAGAAAAATTTCAAGAAATTGGCAGCAGTCACATTTGTTCTTGACAGATTTCTTTTTTGGCAAGGAGACAAGAAGATATCAATGGCCATAGTGGATTATATTCAAGAACACAGCCCTGAAACTGCTATTGCACCACAGCTGCTAGTAAGAAGGGCAAGGAATATGAAGAATGAAGGCAATCTTAGAGAGGAAATCCTGGACGAAGTATCCAAAGAAAAAGAAGGGGTTGGGCATTGGAAGCACAGACATGAATTCCAAGCAGACCTTACGAGGGCTGCATGTATTCAGCTTAAGGGTGAAATACAGTACATCCTTGGAAATTGGTTGAAGTCTGCTGGACTTCTTCTGGAATCCATTGAATTGTTTGCAAATCTTCCAAATCCTGATAARAAGGGGCTTTCGCTTGGTTATGGATTGCTGTGCCCATGTCTTCGCAACATGACATCCAGGGACTATTCTATTTTGGCTCAGRAATTTGGGCTTGTTCAGTTACATCCTCTTCTTGCGGCATACATCAGTGCTCAAGAGGCCGCAAAATCGTCAACGTACACCCCGATGTTCTTTGTCAGRCACGTTTGCCATGCAGGTGAAGTATTGTTGGAGTTTATCAAGCTTTCAACGCACAAAGAAGAAAGGCAAATGYTGTTGAGAGTCGCTATTGAAGACCTGAAAGATAGCATCCAGGCCCATCAGTCGTTCAAGTCCCTGACCAGCAGGGAACAGTTCTACATTCTTGTCTTAGCATGTTTCAAATTGAGCCTTGCGCTATTAGAACGTCAATCGGAAAATGACAAAGATGTAGGAAGAAGCTTAAAACCTATAGCAGCAAAGCTRTTTGAGCACTACTGCTCTTCTACTGGCCACGTTCTGGTGGATGACCGAGTAGTGGAACTTATTAAAAAGTGCCTTGATTTACTTAGATTGGAGACGTACCACARCGATAATTTACCAGATTCTGGACAAATTCTTTTAAAATATTACAAGCGGCGTGGAGCCCAGCGTTTGGAAGAAAATACTCGTCTTAGAGTTGAGGGGTTATTTGCCAATAACAAACAGATGCCTTCAATGCCGGGGTCTCCTGAATCGTTAACTTATGATGAAAGTAGCCTTTTTGGCTCCCCAGGCAACAATAATCAGCATATATCAAGAAATGATGTCGAGAAATACCCAGTCATTGAAACTATATCAGAAAGATTGACCGACGAGTCTGTCGACCGTTGCGCAGTTACAATCGAAGATAAGGGTRCTTCGGATAAAGATAGGGATAGTCCACCAGAAAATGGTATTGATGTCGATCAAGAATTTGAATCCAAACCTGGTGAAGATACAGGCAGATCAGAAAAGGATGGGACTGTGGATCGCTGTKCACGGACAGTGGAAGAGGAAAAAACTTTAAGCGGTATGAWTGAAAATCAACTAGTTCTTGCAGTGGAGGAAAAGGTGGAATTCAGAGCCGGTGAAGACACAGGCACACCAGAAAAAGATGGGACTGTGGATCGCCGTGCACTGACAGTAGAAGAGGAAGAAAASTTAGTCGTAATGACTGAAGATAAACGAACTGCGGCACTGAGGGGCGAAGACTTGCAATCCAGAACCGGTGAAGATATGGACAGACCAGAAAGTCGTGTCACAGTCGATCAATTTGCTCTGACAATGGGAGAGGTGGGAAGAGAAGTAAGCTTCAAAACAGGCATTACTGTAGATGACCACAAAGTAGGAGAAGAAGAAGTAGGAGATTTGAAATTCAGAACTGACGAAGATACAGGCAGACGAGAAGGGGGTGTGCCACTTGATCAGTATGCTSGTCAAGTTGAAGGAGAACAAAAAGAAGCGTCGGACGAAGATGGAGGTGCTCTGACTGGAGAAGAAAAAGAAGAATCGAAGACCAGCGGAATTGGTGAAGTTACAGTTATACCAGGAAAAACGAGATGTAGAACTGATCAAGAAGTAGCCAGATCAGAAAATGATCCTCAGCAAATAGAAGGAAGAAAGAATATATTCACAGAAGAGTGCAAGCCCAGAGAGTTTGAAGTTTTGGAGGAAGACAGGAATAATATCTCAGACACAAATATTGATCAAATTGAATTGATCATGAATACCAAAGGTGAAGAAGAAAAAGATTGTCCAGTTGATGATTCAAGCATACAAAGAGATGTAAAGAGCACTGAAAGTGAGAATGATGAGAAGAACCAAGGCTCCCGGAGAGAAAATAACCCTCCCATTGCCCCATTTGAGGAAAATGAAGGCAACAAAAACATTGCCTCCCCAGTTGATGATTCCAAATATGGCAAGGTCTCTTCCCGATGTTCATCTTCAAAAGATGAAAAACCGAAATCATTAAGCATCCAAGGCAAAATACTTGATCGAGATGCTTTTGCAGAAGATCAACTCAAGAGCAAAACTGTCGATGAATATGCATTTTTGTTGAGTCGTTCAGCGGAAAGTGACTCGCAAATCATAATTCAAAGCTTAGAAGACGAGGCCGTGTCGTTACCATCCCATAGTCAGCCTAAAATGCCATTACATTTTGGTGAGCTAAACCCTCAGCAAGATGAAGATAAATCAAAAAGAGCTCTAGATGGTATTTTATGGAAGTATGATTTCCCAAGTAGACAATGGAGGTATAATCAAATTATGGTATACATTGGGGATCCATTGGAACTCCARAAAGGAATGGAAGGTGCTCAGAGAGATGTATTTGCTGTGGAGTTTATAAATCAAGATGAACCTCTTCAAAGATATGTAGCAAAGAGGTACCGAAAGAAAATCCACCATCAGCAGTATGAGAATGACGTCTTAAGCCAGATGACGGCCCGGCATTACGTAGCGATGTTTAACCAAGAGCTTTCTAAGGCAGCCGCAGGTGTAACCGTCGGAGAAATCCAGTTTTTGCCGGTAGTTCTCCTCCAGTTGGTCAAYACTTCCGGTCACGTAACCGATGTCTTAAATGCTGAGCCATACATGTCTGGGGAGTTTACTAAATTAACCAATAACGTTGATTGGAAAAACGAAAGAAGACGTACCGATCTTGTGTTGGCCTACAGTCATTTTACTTACCAAGCATCAGACTGTAAATTGATTATTGTTGATATTCAGGGTTGGGCACCACGCGATAACAAGGGATGCACTTTCTTAACAGACCCACAGATTCACTCTCGAGTTTACAAATGCTTTGGGACTGGTAACCACGGGATAAAAGGGTTCGAGAAGTTTTGGACTGAGCTGCATTCCGAATGCAATCATATTTGCAGGATGCTTAATCTTCGTAGGCCATCAGCACAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXB8	Alpha-protein kinase 1 OS=Mus musculus OX=10090 GN=Alpk1 PE=2 SV=2
Q96QP1	Alpha-protein kinase 1 OS=Homo sapiens OX=9606 GN=ALPK1 PE=1 SV=3
Q6B9X6	Alpha-protein kinase vwkA OS=Dictyostelium discoideum OX=44689 GN=vwkA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003041 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02816 all species →	Alpha_kinase	Alpha-kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004166 all species →	Domain	Alpha-type protein kinase, alpha-kinase domain	Interproscan
IPR043529 all species →	Family	Alpha-protein kinase 1	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46747 all species →	ALPHA-PROTEIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0002753 all species →	Biological Process	cytoplasmic pattern recognition receptor signaling pathway	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08868	ALPK; alpha-kinase	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ22010.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

18.8Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	8.18	15.55
whole animal · symbiotic	36	34	10.89	18.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.55
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.27
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.93
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.83
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.27
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.62
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.47
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.38
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.14
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.97
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.90
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.76
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.40
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.07
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.85
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.59
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.47
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.11
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.09
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.06
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.83
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.68
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.49
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.87
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.60
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.58
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.46
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.41
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.39
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.22
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.14
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.94
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.88
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.27
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.82
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.86
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.80
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.33
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.08
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.92
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.48
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.30
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.28
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.23
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.83
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.31
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.77
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.34
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.99
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.69
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.52
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.52
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.51
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.38
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.29
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.23
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.90
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.83
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.78
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.74
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.57
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.43
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.19
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.02
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.98
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.15
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.00
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.85
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.