Gene detail

Detailed information of KXJ22285.1 in Exaiptasia diaphana

Genomic Location: LJWW01000083.1:329897...334323
NR annotation: XP_020915238.1, glutathione-specific gamma-glutamylcyclotransferase 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SPB6	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Danio rerio OX=7955 GN=chac1 PE=3 SV=1
B3STU3	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Rattus norvegicus OX=10116 GN=Chac1 PE=2 SV=1
Q8R3J5	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Mus musculus OX=10090 GN=Chac1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002270 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04752 all species →	ChaC	ChaC-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006840 all species →	Family	Glutathione-specific gamma-glutamylcyclotransferase	Interproscan
IPR013024 all species →	Domain	Gamma-glutamyl cyclotransferase-like	Interproscan
IPR036568 all species →	Homologous_superfamily	Gamma-glutamyl cyclotransferase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12192 all species →	CATION TRANSPORT PROTEIN CHAC-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0061928 all species →	Molecular Function	glutathione specific gamma-glutamylcyclotransferase activity	Interproscan
GO:0003839 all species →	Molecular Function	gamma-glutamylcyclotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07232	CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase	EC:4.3.2.7	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ22285.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

56.5Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	15.38	45.03
whole animal · symbiotic	36	31	17.78	56.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.03
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.57
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.30
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.15
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.95
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.92
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.79
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.60
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.21
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.04
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.86
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.84
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.71
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.26
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.47
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.26
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.85
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.34
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.09
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.02
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.90
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.19
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.74
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.73
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.11
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.08
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.24
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.39
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.37
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.87
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.39
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.59
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.46
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.22
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.70
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.10
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.63
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.14
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.00
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.90
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.41
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.70
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.37
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.24
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.59
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.02
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.32
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.18
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.16
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.67
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.28
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.23
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.83
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.80
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.76
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.49
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.99
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.93
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.47
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.52
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.36
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.05
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.46
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.