Gene detail

Detailed information of KXJ22367.1 in Exaiptasia diaphana

Genomic Location: LJWW01000082.1:194092...196886
NR annotation: KXJ22367.1, Ubiquitin-40S ribosomal protein S27a [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62992	Ubiquitin-ribosomal protein eS31 fusion protein OS=Bos taurus OX=9913 GN=RPS27A PE=1 SV=2
P62978	Ubiquitin-ribosomal protein eS31 fusion protein OS=Cavia porcellus OX=10141 GN=RPS27A PE=1 SV=2
P79781	Ubiquitin-ribosomal protein eS31 fusion protein OS=Gallus gallus OX=9031 GN=RPS27A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000498 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF01599 all species →	Ribosomal_S27	Ribosomal protein S27a	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR002906 all species →	Domain	Small ribosomal subunit protein eS31	Interproscan
IPR038582 all species →	Homologous_superfamily	Small ribosomal subunit protein eS31 eukaryotic-type superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR011332 all species →	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02977	RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ22367.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

2,358.8Max TPM

1,763.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	1,878.54	2,358.82
whole animal · symbiotic	36	36	1,647.60	2,193.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,358.82
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,299.95
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,269.77
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,248.19
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,229.34
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,227.35
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,226.71
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,178.63
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,144.57
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,143.87
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,143.25
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,110.43
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,055.01
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,940.90
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,894.22
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,880.19
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,860.46
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,859.85
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,857.50
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,846.32
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,831.37
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,830.49
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,820.13
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,808.23
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,759.97
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,691.75
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,557.04
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,552.36
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,545.88
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,525.16
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,519.42
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,510.53
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,499.76
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,485.53
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,475.28
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,439.31
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,193.26
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,022.30
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,002.32
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,993.72
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,987.28
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,971.73
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,967.02
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,955.56
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,941.45
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,902.24
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,860.34
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,857.51
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,833.36
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,771.40
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,740.64
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,727.59
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,724.72
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,719.29
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,707.73
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,694.38
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,685.16
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,680.78
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,673.94
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,432.99
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,432.59
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,384.63
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,383.24
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,363.61
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,353.72
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,336.39
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,210.11
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,182.44
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,181.01
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,171.17
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,140.47
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,127.34

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.