Gene detail

Detailed information of KXJ22629.1 in Exaiptasia diaphana

Genomic Location: LJWW01000078.1:373057...386252
NR annotation: XP_020914477.1, structural maintenance of chromosomes protein 5 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ22629.1

ATGTCGAAGCGTGGAGCTGCAGTCAAGAAGGAGCCTTCTTCTTCCTCTAAGAAAGCTAGAAAGTCCATCGTTAATTCACATTTTAGTGTACAAAAGCCTTCCTCGACCAAAGGTTTTGTCGATGGATCGATCTACAGAGTTAAAATGAAGAATTTCTCGACTTATGATGAATGTGAATTTAGTCCTGGACCGTACCTTAACATTCTTGCAGCGCCAAACGGTACAGGAAAGTCTTCGGTTGTATGCGCAATCTGCCTTGGACTTGGAGGTCACCCCCGTTTACTTGGAACAACTAGCGAGGTAGGAGGGTTTGTGAAACATGGACGTCCACAAGGAATGGTTGAAATCGAACTGTTCAATTCAAATGGTCCAAACTATGTAATAACAAGGGAAATCACCAGAGAAGGGAATAGATCGACTTGGAAACTAAATGGAAAATCTTCTACCTTAGGAGAGGTACACGATGTACGTGATCAGTTGAATATCCAGCTTGACAATCTGTGCCAGTTTTTGCCACAGTTCAAAGTGGAAGAATTTGCTAAAATGACGCCACAGTTACTGCTTCGTGCAACTGAGACAGCAGTTGGGCCTCCTGGAATGTTAGACAACCACAAAAAGCTTATTGAGCTTAGAAAAACTCAGAAAGATCTTGAGTTGACTCTGAAAGGCAAACAAGAGCATCTTGAACGACTTCAAGAACAAAATGGACAGCTTGAACATGAAGTTCGCCGTTTCCAGGAAAGAGAGCGTTATATGGAAAAAGTCCAGATTCTGGAAAAGAAAAGACCATGGGCTGAATATGAGCAGACAAGAGTAAAATTTGTGGCATCTAAACAAGAGAGAGATGAAGCTAAACAGAAACGTGACATGACAAGAAACCAAAATGCTCCCATGGCTAATAAACTAAGCAAGGTTGATAAAGATCTCAAAGACCTTGAAGCAAGAATGAAACAACAGAATGAACATGGCAATGAAATAATGCGAAGAACAAACTCCAAAAAAGAGCAATTTGAGAGGCTGATTGACCAGGTTGAAGAATATTTAGCCCAGTTAAAGGACATGAAAGATAAGGAAAAACGTAGTGAAAAAAAAATTCAGGAACTTGAACGTCAAATGCAAGGAATTCAAAGTGAGCTGGAAAATCTACCAGATCCTGAGACTTTACAGCCACAAATTGAAGAAGTTAACACACAAGCCCGTCAAATCAACAGAGAGCTTACAACAATACAACAGGAAGGAAGCAGAATCGTGGAGGAGAAAAGGCACTTAACAGCTCAAGCATCAGATGCAAAGAGCAGATTGAGTGTACTTGAAGATATCAAGAAGAAGAGATTAGATCTGCTTCGTAATATGTCCAGAGATACTTACAATGCTGTAATGTGGCTCAGAGAGAACAAGGACAAGTTTAAGCAACAAGTTTATGAACCCATTCTTTTACAGGTGAACATGCTTGATGTAAACAATGCCAAGTACTTGGAAAGACTCATCAGTAATAATGATTTAAGGTCATTTGTATTTGAAACAAGAGAAGACATGAACCTATTTCTCCATGAGGTTCGCGACAAACAAAACTTGAAGGTCAATGGTGTTACTCCACCACCAGAACCACTCTCTCATTTCAAGCCAACTCGAAGCATTGATGATCTAAAGAAATGGGGGTTTCATTGCTACATCAAGGATATGTTCACAGCACCAGATGCAGTCATGAAGTACTTGTGTGAGAACTATAGAGTCCATGACATCCCATTGGGTAGTGACTACACGGCTAAGAATGCTGAAAAAGTTATCAACGAATCTGGACTGACTAATTTTTTCACGCCATCATCAAGGTACACAGTCAAGAGGTCCAAATACGGCAATAGAGAAAGATCAACACGTGTTGACCATATTGGGGATGCAAGGTTCTTCAATAATTCTGTAGATTTGGAAGCAAAGCGAATTCTTGAGGCAGAGCTCCAGGAAATCCAAACCCAATTGCAAAGCATGAATGAACATTATAAAGAGCTGCAAGGAAAAGAGTCAGGATTAAGCAAAAAGCTGGAAGAGCTGAGGAACAAGAAGAAAAACCTTAATTCTCAACTGCAAAGAAGACGGACGCTTGGGAATCAGCTTGAAAATAAACAAAAAATGATAGAGACAACAAAGAAGGAAGCTCCAAATCTTCAAAAGGAAGAAGCTCGAATCCAAAAAGAAATAGACAAAACAAATGGCAAAAGAGTTGCTGCTCTCAAACAATTTAAAGATGGAATTGGGGAATGTGTCAATGTTGGCAAAGAGAAGCTGAGGAGCAGTTTGCAGCATGCAAGACTTTCAGCAGAGAAGACAAGAATTGGAAATCAGTTTAGAGAAGCACAAGAACAAATCAAAAAAGCTGAGGAAGAGTTCGAGGAAGCCCAGAGAAAATGTGATTCCCTGAAAAACAAGGCTAAAAGCTTGAGGAAACTAGCACACCAGAAAACAGACATACCCGAAGGGCAAGACGTTCCTGCAAGCTTAAAAGAGGCTTTCAAGCTATACCCTGATACTCTAGATGAAATCGATGAAATGATCCATGAACAGAGAGCCAGAGCAGAGTGCAACCACCAGACTGACCCTAGAGTTGTGAAAGAGTATGAATCACGGAAGAAGGAGATTAACAGTTTGTCAGCTGTGGTAAATACAGAGTCAGCTGACCTCGAGACAAAACAGCAAAAGATTGATGAACTAAAGGAGAGTTGGCTGACACCTCTTGAAGAACTAATAAACCAAATCAACACCAGATACGGACAGTTCTTTAGAATGATGGGATGTGCTGGAGAGGTTTCTCTTGCTAAAGATCAGGTTGAAAATGAGTTCGACAAATATGGCATTCAAATCAAGGTCAAATTTCGTGCTAAGGACTCATTACATGTACTAAACCCACATCATCAAAGTGGTGGAGAAAGGAGTGTTTCTACAATGCTTTATCTTATGGCAATACAGGAGATGACAAATTGTCCTTTTAGGGTAGTAGATGAGATAAACCAGGGAATGGACCCAAATAATGAGAGGCGTGTGTTTGAAGTTGTTGCTCGTACTGCTTGCAAAGAGAACACCTCGCAGTACTTTCTAATAACTCCCAAGCTCTTACCAGATTTGGATTACAATGATAGGATGACAATACTCTGTGTTTTCAATGGCCACTGGATGCTTCCACATACAAAGTGGAATATCAAGGAGTTCATTAGAAGAAAGAGACTACAGTCTGCCACTGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IY18	Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 PE=1 SV=2
Q8CG46	Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5 PE=1 SV=1
Q802R9	Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes OX=31033 GN=smc5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003514 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027131 all species →	Family	Structural maintenance of chromosomes protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22803	SMC5; structural maintenance of chromosomes protein 5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.