Gene detail

Detailed information of KXJ22650.1 in Exaiptasia diaphana

Genomic Location: LJWW01000078.1:63037...84673
NR annotation: KXJ22650.1, S phase cyclin A-associated protein in the endoplasmic reticulum [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ22650.1

ATGTCCCAACAAGAAGGTCAATCACGAAGACGACGATCACCACGAGTCTCTTCGTCGAGTTCAAGGTCAAACGAAAGCCTTCATAGCGTCAAAGGRAATGGGAACGAAGCTAATAAAACCTCTTCTAAAGATGGATCTGGAAGGAAAGGAAATTTTTCAAAGAAGGGAGTTCATAGAACTAACAGTCAGGATCAAGTAAGAAAACTTGTAGAGAAAGAAGGAAGAACAGCGAGGAACCTGGTCACATGGTCAGTACCTGTCAATAATGAACTTGATGAAGACAGGTCCAAAAGAACCAAACCCAAACTGATGTCCAGGAARCGGCAACCTACACCAGAAAAATCTGGATCATCAGAGCGTGATTCCTCACCAGCRCACAAGAATGGTTCCAAGTCACCAAACAGAGGTCGGTCTGGYCGCAAGACRTCTCAGTCATCAACAGGAAAGAAGAGCGACCTGCGAGCACGATACTGGAGTTATCTGTTTGATAATTTGAAGAGAGCTGTGGATGAGATTTACAGTACTTGTGAAACTGATGAAAGCACTGTAGAATGTGAGGAGGTGATCATGATGCTGGACCAGTGTCGGCGTGATTTTGCTGCATTGATAGAGAGAATCTGTGTRCAAGATGCATTTGAGAAAGCAGACTACAAGGACAGACCAACATCATTAGCGTGGGAAGTACGCAAATCTTCGCCAGGAAAATCACTAGTCACCAGCCCTTGCACTGTCCAAATGGAACGAAACATCCAAAGCCCAGTGAGGAGCCTGGACTTCAGCAACACTCGAACCACATCAACGACTATTGCTCCAAAGCCAACCGTCCCCACCCAATCYCATGCYGTTATTCAAAACGGGCCTTCATGGGCCGATCGGGTTAAGGGGACCCCYTCTGTAGTGACCAGTACGACCAAAATTGTGCCGTCTAGTACGACTGCCTTTACTATGAACCAAGTATTGCAGGACAACAGCCGAAATGCCTGTGTGAGTCCAGATATAGGAGATGGTACAGACGAGGAGGGCTGGGAAACAGTCCGACATGGRAAGAAACACACCCTTCAAGGTAACCATGGTGACGCGAGAAACAACAGAATKAAAAAACAGAATTCTCATGATAAATCACCCCAGAGTAACTATGGCCACTTACGAGCCAATCAGAGATCTCAGGATGGAGAAGGTATAAAAAGTCCACAAAGTTACCATGGTGAAACAAGAGCCAATCACAGCCAAGCGAAAATCTCGCCGCGGGAAACTGGACAGTCTAATGGTTTAGCAAATGGAGTTACTCTCAATGGAGATGTGCACTGGAAAGTTAACCCTAATTTACTCTCTCCTCCAAGCAATCGTAAAATCTCACTCACATCTGATGAAGATGAAGATCTTGCACTCCCCTTGGACGACAGCGATGCTGAGAAGGAAATGAAGCTGGAAGCAGAGCATGAAAAAGCAATGTCGGACGCCATTGAGGAAGAAGAAACTCTGTCYAAAGAGATAGAGCAGTGGCAAGAGCAAGCACTTGCATCAGCTATTGAACACGAACAGAGTTTGAACAGAGAGATTGCAACGGAGGAAGCGTTTGTTACAGCGCTTAACGGAGATGTTGAGACACCCACTTCTGAAYTAGAGACTGAGACRGAGGGAGAAGGGGATGGCAACAGTGCAGGCACTGCAGAGACATCACTTGAAGACTCTGGAAAGGCGATAACGTGGGACGAAATGGTAGCCAACTATGAATCTAAGAGAGAATCTGGTGATAACTTGAGTTGGGGTGATACAGTTGAATGTTCTGAAGAAAGACCACCAGGAAGAGCTGTAGCGATGCACCAAAAACTATCAGCACCAACAAGAAAAAGACCATTGGCCGAAAAAATACGTATTCACGAGGAGAAACAGTTCAAAGCTCGTCAACAAAGGGAAAGACTTTTAGAAGAACGACTCCAAAAGCTGCAAAAAGCTCAGAATAAAAAGATGGAGGTSATGTCAAGGATACAGGAGCACGCCGCGCGTCTACAAGATCTACAAGAAGAAAAGAAGAGAAAGAAACGAGAAGAGCAACAAGCTAAAGAGACCGCTGCGCAGGAAAGACGTCGTCAGCTAGAAGCCGATCGACTTGCAAGACTAGAAGAGGTCCAACAACGTAAACTTGAGCAGGAAGCCAAATATAAGAAAGAAAAAATGGAAAAAGAAAGAGCAAGAGAAGAAGCGGCAAGAGAAAAAGCCAGGTCTGTTGAAATGCGTATTGCTGCCAAGAAAGAAGCTCTACAGACTGCGACAGAGCAATTACAGATGAAAATAAAACAAAAGATTGTATCTGAAGTGTATTTATACAGTCATCTTAGAGGTAAAAGACACCAACAAGCTCTCTTAGAGACTAGTGGATTTAAGAACCTAACAGATGATAAGGACGTAATGTCATTACAATGTATTAAAGAAATGTCCAAAGACCAAGCAGAACAGCAAGAAAAAGCTAACCTTGAACGAAGGAAAGCTTTGAAGAAGAGAGCTAAAAAACTAAGGACTCGWATGGCAGCTAAGGGAAGAGAGTACGAGAGCACATTATCAAGCACAGCACCACCAAAGCAAGACTCTGCAAAACGTGCCAGGTTACAAAAGATAGTCAAAGACATCAAYCGATATCTTCAAGTTCAGGGCTCAGGCCCTTGGCCGTCAAACCGTGTGACGTCATTAGACCGGTCGGTGGGCGAACTCATGAGAATAGTTGAAGATGCAACCGATAAGCTAACGTTCTGTAATCTTGGTGGATTATCTGCCTTGGCTAGAGTTTTATTAGTCATTGATGTAACTGATTCTAAAACAACTTCTACACCTATCATACCTGATCGTGTTCTTTGTCACGTGGTCCAAGCCTCTACATTGATATGCAGCGAGTGTCACGAGACGAGTCAGTACATGGTTTTCACAAACAAGTTGGCCTCTGTAGTAGATCTACTGGCTTAYCAGCTTAGGATCTTTTGTTCTGATGTCACAACAAACCAAGCATTAAGGAAATCATCCGAATCTAAGGATACCCCATCTCGTTGCCAAGGAGACCCCTTGRTATCTGCACTGTTTAGTATCTTAGCAACCGTCATCCAATCGCTTGTCATTCCYCACAAAGACGAAAAAGCCTCGTCGACTGCATTACAGAGAAATATTGATCTTATAAGTTATATCGTGTGTTCTGATTTGATTGATGATATTCGAGTTTACCTGACGTCTATACAAGAACCGTTTGGTGAAGACRCCGTAATGGTGGATATGGTTTACAATTGTATGAAGCTAGTCTCATCTATACCGCGGTTTCTAGGGTCTAGAAGTGGTAACGTCTTTGAAGCCAAAAGAGAAGACACCACCCAGTTTGTCATCACATTCCAGCAAACAGAACTTGTTGGGATAATTTCAACCTTATATACAATGATATTGTCCGATGGACAGGCGCGACATTTTTCTCCCCCGCCTCCCCTCCCTGAGTACCAAATCAAAGTCGCCATCGAAGGTCTTCGGGCGTTGAATAACATGGCTTGTGTTGACCTCAAGGCTTTACAGAGTTCTCTTGGAAGTGAGGGAGTTTCCCTGGAGTTTCGTCACATAGTCAGCTATTTACTCTGGATATGTGGAGAAGGAGCACCTGAAGACCTTTTACACGAAGTAATTCTAATTGTCGGTTATTTTACTGTGTTGAATCAGGAAAATCAGGTATTTATTCAGTCTGGTCGTAATCCAACTCTTCTGCAGCAGTTATGTGGTCTACCATTCCAGTACTTCAGTGAYCCAAGGTTAAGGAGTATTTTGTTCCCAACTCTCATTGCTTCGTGTTATGAGAACGAAGAAAACAAAGCTATTATCGAACAAGAAGTGAGCTGTGCCCTTCTCGAGAACTTTATCCAGGACAAAATGTTGGATAGTCCACCAGATCACAGCCACACTACCAAATCAATGCAAGAAGGAGTTGTTCCAGATCGTTTTATCTTGGAGCGAAGATTCCCAAAGTCGACTTGGACAAAAGCGACCGAGTTCCTCGTCGCTGTACCATTAAATAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens OX=9606 GN=SCAPER PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003403 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16501 all species →	SCAPER_N	S phase cyclin A-associated protein in the endoplasmic reticulum	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032446 all species →	Domain	S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31434 all species →	S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM	Interproscan

Gene Ontology

No Gene Ontology signature was detected for KXJ22650.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24869	SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ22650.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

15.5Max TPM

8.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	7.44	15.39
whole animal · symbiotic	36	32	9.23	15.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.39
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.39
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.21
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.96
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.73
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.63
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.52
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.49
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.30
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.95
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.89
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.78
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.67
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.48
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.42
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.04
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.91
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.37
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.19
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.16
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.12
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.06
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.88
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.79
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.72
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.61
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.09
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.49
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.46
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.45
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.03
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.02
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.67
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.47
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.38
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.46
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.45
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.23
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.85
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.83
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.95
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.47
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.46
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.55
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.43
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.39
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.65
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.38
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.20
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.10
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.65
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.40
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.90
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.66
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.45
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.29
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.13
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.01
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.85
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.80
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.66
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.39
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.85
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.68
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.21
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.