Gene detail

Detailed information of KXJ22845.1 in Exaiptasia diaphana

Genomic Location: LJWW01000075.1:699644...701632
NR annotation: XP_020912772.1, 60S ribosomal protein L21 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46778	Large ribosomal subunit protein eL21 OS=Homo sapiens OX=9606 GN=RPL21 PE=1 SV=2
P49666	Large ribosomal subunit protein eL21 OS=Sus scrofa OX=9823 GN=RPL21 PE=1 SV=3
G1SHQ2	Large ribosomal subunit protein eL21 OS=Oryctolagus cuniculus OX=9986 GN=RPL21 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006391 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01157 all species →	Ribosomal_L21e	Ribosomal protein L21e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001147 all species →	Family	Large ribosomal subunit protein eL21	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR036948 all species →	Homologous_superfamily	Large ribosomal subunit protein eL21 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20981 all species →	60S RIBOSOMAL PROTEIN L21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02889	RP-L21e, RPL21; large subunit ribosomal protein L21e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ22845.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

3,233.4Max TPM

1,813.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	1,748.71	2,425.32
whole animal · symbiotic	36	36	1,877.87	3,233.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,425.32
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,099.62
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,064.86
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,036.95
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,006.79
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,998.77
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,983.79
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,927.85
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,917.00
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,910.58
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,873.95
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,793.88
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,778.81
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,751.20
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,745.01
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,733.32
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,732.54
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,724.21
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,716.78
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,704.47
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,702.79
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,678.69
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,667.61
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,650.84
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,642.98
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,618.98
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,617.90
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,617.24
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,588.91
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,561.73
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,474.76
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,458.74
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,456.96
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,437.61
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,435.96
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1,416.02
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,233.36
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,239.43
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,228.93
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,065.63
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,016.89
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,981.30
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,927.77
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,922.81
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,916.55
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,910.30
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,902.75
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,900.43
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,861.41
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,857.31
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,848.55
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,846.98
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,822.90
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,815.99
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,813.48
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,798.40
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,796.73
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,791.87
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,790.09
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,776.92
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,763.41
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,756.17
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,755.64
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,752.32
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,745.85
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,740.92
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,729.57
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,727.01
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,726.44
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,721.48
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,669.30
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1,448.37

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.