Gene detail

Detailed information of KXJ23167.1 in Exaiptasia diaphana

Genomic Location: LJWW01000071.1:108102...115086
NR annotation: XP_020913487.1, very long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48818	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=ACADVL PE=2 SV=3
P49748	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADVL PE=1 SV=1
Q8HXY7	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=ACADVL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF21343 all species →	ACAD9-ACADV_C	ACAD9/ACADV, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR049448 all species →	Domain	ACAD9/ACADV-like, C-terminal domain	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0017099 all species →	Molecular Function	very-long-chain fatty acyl-CoA dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09479	ACADVL; very long chain acyl-CoA dehydrogenase	EC:1.3.8.9	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ23167.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

213.3Max TPM

116.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	89.43	123.39
whole animal · symbiotic	36	36	144.17	213.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.39
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.37
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	122.48
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	120.95
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	119.71
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	119.63
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	115.93
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	113.45
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	112.21
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	112.02
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	111.35
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	110.21
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	110.08
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	105.54
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	103.76
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.94
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	94.22
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	88.10
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	87.88
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	86.35
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	84.50
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	82.67
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	80.14
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	80.08
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.37
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.32
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.25
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.95
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.85
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.87
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.77
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.97
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.74
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.60
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	213.26
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	171.43
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.62
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.14
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.01
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	159.14
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	158.99
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	158.69
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.01
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	156.74
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	154.42
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	153.43
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	153.19
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.96
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	151.71
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	149.47
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	149.17
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	148.18
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.37
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	144.53
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	138.58
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	137.66
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	137.52
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	135.92
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	133.70
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.19
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.82
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.62
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	130.07
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.93
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	124.04
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	122.90
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	122.52
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	119.03
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	116.85
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.33

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.