Gene detail

Detailed information of KXJ23909.1 in Exaiptasia diaphana

Genomic Location: LJWW01000060.1:82286...84675
NR annotation: XP_020911728.1, POU domain, class 4, transcription factor 3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90435	POU domain, class 4, transcription factor 3 OS=Danio rerio OX=7955 GN=pou4f3 PE=2 SV=2
Q91998	Brain-specific homeobox/POU domain protein 3 OS=Gallus gallus OX=9031 GN=BRN3 PE=2 SV=1
Q15319	POU domain, class 4, transcription factor 3 OS=Homo sapiens OX=9606 GN=POU4F3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006834 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09366	POU4F, BRN3; POU domain transcription factor, class 4	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ23909.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

169.2Max TPM

49.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	53.13	169.23
whole animal · symbiotic	36	32	46.25	84.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.23
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	96.22
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.79
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.23
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.03
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.51
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.64
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.95
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.63
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.90
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.43
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.14
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.73
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.29
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.97
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.94
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.49
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.72
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.67
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.53
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.77
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.26
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.01
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.56
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.44
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.40
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.11
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.18
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.31
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.00
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.56
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.14
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.12
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.81
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.86
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.48
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.46
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	76.12
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.09
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.77
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.21
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.31
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.93
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.85
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.11
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.04
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.86
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.64
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.35
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.76
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.68
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.61
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.41
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.60
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.55
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.13
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.46
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.80
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.48
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.44
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.06
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.84
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.82
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.01
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.57
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.84
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.