Gene detail

Detailed information of KXJ23948.1 in Exaiptasia diaphana

Genomic Location: LJWW01000060.1:358296...362224
NR annotation: XP_020911731.1, ubiquitin carboxyl-terminal hydrolase isozyme L3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15374	Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens OX=9606 GN=UCHL3 PE=1 SV=1
Q9JKB1	Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus OX=10090 GN=Uchl3 PE=1 SV=2
Q2TBG8	Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus OX=9913 GN=UCHL3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004124 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01088 all species →	Peptidase_C12	Ubiquitin carboxyl-terminal hydrolase, family 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001578 all species →	Domain	Peptidase C12, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036959 all species →	Homologous_superfamily	Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10589 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05609	UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ23948.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

85.3Max TPM

50.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	44.78	60.73
whole animal · symbiotic	36	33	55.81	85.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.73
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.56
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.24
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.63
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.52
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.00
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.76
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.67
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.58
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.75
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.83
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.69
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.48
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.44
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.90
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.89
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.63
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.09
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.53
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.21
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.19
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.98
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.43
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.91
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.60
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.93
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.69
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.31
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.58
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.00
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.26
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.34
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.79
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.27
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.27
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.17
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.42
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.66
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.02
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.45
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.76
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.42
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.36
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.24
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.79
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.93
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.62
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.17
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.07
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.84
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.46
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.46
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.67
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.22
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.05
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.98
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.26
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.79
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.46
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.22
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.70
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.43
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.76
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.00
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.65
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.57
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.