Gene detail

Detailed information of KXJ24176.1 in Exaiptasia diaphana

Genomic Location: LJWW01000057.1:261030...281572
NR annotation: KXJ24176.1, Coronin-7 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ24176.1

ATGAACCGTTTCAAAACGTCTAAGTATCGTAATGCTGGAGCTAAGCCAGCGAAAAGAGAGAATTGGTACCTTGATCTACACATTGGAAACTTAAAACTGTCATGTGGCAATCACATCAAAGCAAGCACTAGTCAAATGGCTTTTAATGTGGATTTTGGAGGAGGAGGGAGTTTGGGTGTTCTCAACCTTGATGATATTGGTCGCAGAGATAAAGCACCTCCATACCTACAATGTCATACAGACTTTGTCTCTGACATGGATTTTTCTCCCTTTTTTGATGAGAGTCTACTTGCAACTTGTTCATATGACTGCTCAATTAAACTATGGAAATTACCCAAGAATGTGTGTACTGAAAATGTACCTTCTTCACCAGTCAGTGTTCTTCCTATTCAGCCTAATCGTGTAGAAAATGTTATTTTTCATCCAACAGTCAGTGAGGTTTTAGGTAGTTCTTGTTCCAAGACAGTGACCATATGGGACTTGGAAAAGTGTCAACAAAAATATGAGCTCAGCGGTCACGCCGATGTTGTGCAAAGCTTTAGTTGGAAAGCAGATGGGTCATTGCTGGCYACTTCCAGCAAGGACAAAAAGATACGCATATTTGATCCGAGAGCTTCAACTTGTTCTGGGGAAGGCAGTGGCTTCAGCGGCGTCAAGGATTCTCGTGTTACTTGGCTTGGACATAGAAACCAAATCTTGGGAACAGGGTTTTCTGTGGCAAGACAACGTCAAATAGTTGTTTGGGACATTAATAATCTGACTTTACCACTAGAAACTTTAAATGTTGATTCTAATACAGGTATCTTGATGCCATTTTATGATCCTGACACAGATATGCTGCTTCTGGCTGGCAAGGGAGACTCTAGTATTTGGTACTATGAAGTTAAAGAAAGTGGAAATCCATACTTATACCAAGTGTCAGGTGAGATGGTGGATTTTCAAAGTAAGGGTATAGCTTCAGTGCCTAAATGTGGTATGGATGTCATGTCCTGTGAAGTTATGAGATTATTGCAACTCACTCCTAATGCTATTGTACCTATCAGCTACATTGTGCCTCGCAAGAGGAAAAAAGTTAGTCTTCATCCATCCAAAAATACTTCAAATGAATGCGAGCAAAAACAAGGCTTAAAAAGCATCAAAAGTACATCTGCTGAAAAGACACCTCCATCTAAGACTTTAGAACTTTCAAGTACGACAAGTCAACTGGGAGAAGATACCGTGTCCGCTAAACAGACTGTTTCTATAGTGAAAAAAACGTATACCAGTGCAAAGACATCCAAATTTCGTCACATTGAAGGTATTGCTATGCACAAAAACAACAATATAGAGAACATTCGTAATCTGAGCATGTCAACATTTGGGGAGTGTGATGGTCTACTGGTGAATGATATGTTTGTGGCATGGCTATTGTCTGGACCAGGTGGACAAATAGCAGTCCATCCATTGTCCAAGCCATGTCGTTTACCAGACACAGGGTTACCAATGATTCAGTGTGGAAGTACAGTAATGGACTTTGTTTTTGATCCATTTAATAACCATCGAATAGCTGCAGCTTGTGAAAGTGGTTCAGTTAGTGTTTGGGACATACCCAAGGGTGGACTTGTAGACATTATTGCAGAACCAAGCATCAAGTTGAAAGGTCACCATGACAAGCCAACTATAGTGCGTTATCACCCAACAGCATCTAATGTACTGGCATCAGCTTCTGCTGACTTGACAATCAAGATATGGGATATTTGCACCATGCAATGTGTCATTACGTTACAGGGTCACAATGAGCAGATATTTAGTTTTTGCTGGAGTTTGGATGGAAAGCACATAGTATCAGTAAGCAGGGATAAGAAAATTAGACTSTATGAACCAAGGTCAAGTACAACATGCACACAGATGGGTGACGGTCCTGAAGGTAGCAGAGGCGCTCGTGTTTTCTGGGCTGGTCCTAAAAGTGAGCTTCTGGTTCTATCGGGTTTTAGTAGGTCAAGTGAGAGAAAATTAATTGTATATAACTCCAACAATCTTTGTGAACCTCTGCAATCTGTGTCACTTGAAGTAGCACCATCAATATTAATACCTTGGTATGATGATGACACTGGTGTTGTCTTGTTATCAGGAAAGGCCGTTGGTTTCTTGGATAAACGTTCAATTGATGTCCGTTCAGTAGAGGTAGCAAGAGGTGTCAAACTAACGAAGACCAACATTGAACTCATCCAGTTTAGAGTTCCACGTGTAAAGATGGAATATTTTCAAGATGATCTTTATCCTGACACTAAGATTAAATGGGAACCTGCTCTTAGCAGCAAAGAGTGGTTTTCAGGCAAGAATAATCAGCTCAAGACAATGAGCCTAAAACCTGCAAACATGGAATCATTGACTGATATTCCGAAAGAGGCTCCATCTACAAAAAAATATGACAGTACGAGAGAACTACAAGACTACAAATCAGACGAACAAAAGAAAGAAATGCTTGTTACTGCAATGGTAGAAAAGTTGGGTAATTTTGACGAAGATCCTTTGCCTCAAGACCTGATGGAAGGGGTGGAAGATGATGAATGGGATGACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D2V7	Coronin-7 OS=Mus musculus OX=10090 GN=Coro7 PE=1 SV=2
O35828	Coronin-7 OS=Rattus norvegicus OX=10116 GN=Coro7 PE=1 SV=2
Q0V8F1	Coronin-7 OS=Bos taurus OX=9913 GN=CORO7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004094 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08953 all species →	DUF1899	Domain of unknown function (DUF1899)	Repeat	Interproscan
PF16300 all species →	WD40_4	Type of WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015048 all species →	Domain	Domain of unknown function DUF1899	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR015505 all species →	Family	Coronin	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10856 all species →	CORONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18619	CORO7; coronin-7	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ24176.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

109.0Max TPM

38.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	38.03	109.02
whole animal · symbiotic	36	33	39.11	51.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.02
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.30
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.18
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.79
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.65
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.41
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.34
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.83
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.46
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.24
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.67
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.70
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.64
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.55
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.06
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.74
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.04
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.78
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.59
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.07
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.99
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.57
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.56
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.31
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.00
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.86
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.62
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.43
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.95
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.88
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.61
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.48
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.00
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.58
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.01
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.12
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.43
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.92
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.65
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.29
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.95
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.79
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.91
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.42
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.39
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.30
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.10
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.69
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.42
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.78
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.02
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.82
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.60
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.82
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.70
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.95
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.55
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.35
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.46
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.35
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.75
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.12
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.77
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.75
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.44
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.63
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.70
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.