Gene detail

Detailed information of KXJ24808.1 in Exaiptasia diaphana

Genomic Location: LJWW01000049.1:645399...658895
NR annotation: KXJ24808.1, Lysosomal-trafficking regulator [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ24808.1

ATGTTATTTACAGCTCCTGTTTCCAAAGGCTCAAAGAAGCGTAACGCTGTTGAGTGGTTGGTAGGAAAGAACGAAGCGTTTTATCTTTATTCACTTGGACCAAATGCTGCCAGTGTYGGTCATYTACAGAACGACTTTGAGCTCATGACATCAAACAATCCTTCTCAGTCGTTTTTAATYGCAAGCAAACTTTGGTCCAGACTCTCTATCAGTGAGCGGTCGGTAGGAAGYGAGTTGAAGACTGGATACTTGACTAGTCCTTTCATGATMATCCCAGATATAGAGTCCTCTATAAGGGGAAACCTTTTCTTGTCCTACTCACCGAAAAATCCTTCCATGTTCTCGCAGGCCGTTCGATTACCATATATAGATGATAAATCACGACGAACAAGTCAATATGACACATCTAAACCACCAATCACAGTGAATTTTGTTCAAAACGAGGCTAAACTATTTCATGAAGTGAAGGCTCTTAGGGTCAGTACGCTATTAGAAGCAGCGTATGACGTTGGAGGGATGACAGTTTTCATTTACCTGTTCGGGAAGGTAGTTGAGATGACGAACGACCACAAGACTCAAGCCGATGCACTTTCAGTCGTTCTCTCTTTACAGCGGAATTGTGAATATCACGCATGCGCAATGTACCACCAATCAGGTTATGCTTTACTGAAAAGAATACTTCTTACCCCGCAATGTATGGTGGGATATCATATGCTGAAGATATTAATGGAAGCKGCATGTGACGGCGATGTCTTCAAACAAACCAACCTATCAGACAACCCKATCATGYTGAATATCGACTCCAACGCYGTTGTTCGTAATGTCGACATATTTCAACACTACCTCCTCAACTGGAAGATATGGGACAAGGCTAAACAAGGAGTTTTTGAAATGTTGCTCTCGACTCTAGAGATACTCGTCCATGCCAGTCAYCCTCACTACAAGTTTAATATCWGTCAGYTTCAAAARGCTGAACTTGTACAACAGCTTCTGATTGGTTGTCAGGAGCGTCTTGGTGAAGGTCTTACAGAGATTCCATCATCCATCAGTACGCTGTATGTAAATATCATTCACAATATTATGGGTAACCCGCCTGATCTGACSGTATTGAAGGCTGTATGTGAATTCTTGATAGCAGTGCATCCAACAGAGGAAATCATTCGTCTTCATTCTCCGAGTAGATTCTACTTGACYGAGCGCAGCTTCARATTTGATTGCAGAATTCCTGCTGTAACTCGCCAACCACTATTAGTACCATCATCACTATCTGCACCAACGATTAAGAGGCAAAGTCCTATTCCAATGTCCAATCCAGTCCAAGAAACCAGCACAGCTCCAMATTCCAGTCCRRTCCAAACATYCAACTCGGTCCCACCATCTAGTGCAATCCCAGCATCCAGWARTGTGACATCRCCTTGTAACCCTGYTAGAAATTGTAACGATGAATTGCGTGAMGTGTGTGAYGCRCTRTCAGTCGTCCAGGACGACAAACACCCGACASTAGCTGAATCAGACAGGAAAATTTCGTCATCAAGTGCACATAGCACCTTGTCGTCATCTCAAGAACCAGAATCATCAACAGTTCAATTCATCGGTCCTCATTTCGCTAGTTGTCCACAGCCTTCCGCTGGCAGGAATCTCACTGTACAAATTCCTAGTCAAACGCCGCCCACTGCTAAGCCTGTATATGGGTCAGCGGATGGCGCTAGTATTTTACTGCAAAACAGTCCACTAAATGAAAGATATTCCTCTTTCTCCAGTCCATCAGCGAACCAGACTCCACTAAATGAAAGATATTCCTCTTTCTCCAGTCCATCAGCGAACCAGACTCCACCAACGCCACAAACATCTGCTGGTGAGTCATACACGGGTCCTGAGAGCAATCCTATGTCGATATCCAATCAAAGTACCACACCACAGAGTATTGAGATGGCGACATCAAGCGTTGACGTCATGGAGTACGACTTCATCGACGAATCAGATTTCAGTTCTTTTAAAGGAAGTTTTGCTAATCAAAGTTCAGTGGATGAGTACCTGGTTGTCGAGGGTTATCCTGGTATTAAGTCAAGTACTGGTACATATAAACCTGGTAATAAACGCGACAGAAGAAAGCACGTGACTGATCACATGACTAAGATGAGATTAGGCCTGCTAAAACTGCTTCAGAAAGTTCTTCTCAACCTACAAGCCGAACAGATCCCAGGCGTTGTGGGTGGKGTACTTAAGGTTGAATATCTACTTGTMTGGGTGTCGCACCACTCTTCCTCGGTCAGAGAACTCGTCATTAAGATTTTATGCTTATATTTACAAAAAGCAGAATCTGAACGATACAATCATTTTGTTGATATCCGTGGATTTCATCTCTTAGCCAATCAGATTTACGACCACGAGGTTACCAAGGGGACCATCGAAGCRTTGCTATGGTTACTAGTGGGTCGACCAGTTGAYCTGGAAAAGGATTATGCATACTCCACTRCTAGTATGGACCAGTGTTTGCTGAGTTCAGTACGAGCATTGGGCGTGGTCCCGTTACTATCGATACTAGAAGATACTCTYGTCTCACAACATCTTCATCACATGTTGGTTAAACATATTTGCCAATTATTCCTCAAGGTTGATGAGTTATCGTTAAAAGCTGTATCACATGGTTTATTGCACACCATATGTAAYGTGATTACTAGACTTGCAAGAATACACCATCAGCAAAGTATGAATAAAGAGGACACCACAGTCGATGTCAATGCATTAATGGATGATATACAGTCATTAATCGCTAGTGTCGTCATCAGAGCTTGCAGATTTCCATTCCGTGGAGGAGAGAAATGTACCGATCACCATCCCTTCAAACCAGTCTCCACATGGATYCCATTATCTCACGACCATAATATGCCGTGTTGGGATCTAGGCCTACTCAARAACACACCAACAAGCGCCAATTCCAATGAACAAACACAAAGATTTCAACTCGTTTTACAAATTGCTGTAAACTGTGTTACATACTCTAGAACATTCTTAAGTAACGACCTGAGCCCGCTACAGTTTTATGCCGCTGATCTTCAGATTCACGATTGCCTCAAACCAGGAATGATTCAAAGAACTACGAGTGGAATCAACATCGAGAAGGACTTTGCTCAGTTTGCCAAAAGACTTCTACAATATCTACTGTCGGGAAACGGAGGAGGAAAGGTCCAAGTCTGGGATCAAACTGACACTACAAACATTGTGGAGTGGCACAAGAAACGACTTGAAGCCTTCAAAGTAATATCACAAAGAATCGAAGTTCTTAGTGGGCAATTGTCGAGGTCAGCCATGGACGTAACACGAGTAGCAGTCGAGATCCAAGACTCGCAAAGACAGACATTACTAAAACATAACAGAGATGCCTTGTCGGCTGAAGTACAAGTCAGAAAGAAATGGCGACAACTTATTGAAAGATTAATTCACGAACGGTCCATATGGTACGACAGCGACTTTTTCCCAAAATCCTGGAGACTGGATCCAACTGAAGGTCCTCTGCGAGTGCGTTGTCGAATGCAGCGGTTTCATCTGGACGTTCCCGCCAAGCATGTCATGCAGGGATACAGAAAGAATGGTACAGTAAAGTGTATTTCACCGCTGGCCTATTTGTTCGAAGACTGTACTAGCAGTCACCGAAAAAACGTGTACTATATCTTTGACACTCCTGACACGATACGATTTCTGTATCATTGTCGACACATTTTACTTGACGTCAAGACAAATGGCGTCATTCTGATTGGAGAAAGTCACATGTATTTCATTGGTGAGGAGGCAACCACAGCAGATACAGACGTGACACAGATTTTACTAGGTAACAAAGACGCTATTTCCATATCGTGGCTTATCAAAGAAATACAAGAAATACGAACAAGAAGGTACTGTCTTCAGGAAATCGGAGTGGAAGTGTTCCTCACTAATGGAAGGACATATTTCCTGGCATTTGATACGGAAAGCGACCGCGACATTATTTTGGATCAGTTTAAGCAGCGAATGCTACCTATTTACGAGACACCAGCCAAGGAAAACATCCATAACACCACCATGCTAGATCTTTCGAAACCTATCGCAGCACAAAACTACAAAAAAGAGATGAACTATCGAGAAAGATTCCGGTGGCTAAAAGAAGAGTTCGATCGYAGTGGTCAAGGCGATCCTATGTCAGCGCCCTACCATTATGGTTCTCATTATTCAAACAGTGGAACAGTGTTGCACTTTCTTGTTCGTCTGCCTCCCTTCACCAAGATGTTTTTACAGTATCAAGATCGTAGTTTCGATATTCCCGATCGAACGTTCCATTCCATGGCGACCACGTGGCGTTTATCGTCGTATGAATCGTCAACCGATGTTAAAGAACTCATTCCCGAATTCTTTTTTCTTCCCGAGTTCCTCGAGAATATTGAAGGTTTTGATTTTGGTCTCCGTCAATGCGGCGATCGAGTGATGGATGTAACGTTACCCCCATGGGCTAAAGGCAACGCTCGTTTGTTTATCCTCGTTCACAGACAGGCTCTAGAGACAGAACATGTCACTCGTTACCTACACAAGTGGATCGACCTTGTTTTTGGTTACAAGCAAACTGGACCTGAAGCAATAGAAGCAATCAACGTGTTTCATCCAGCGACATACTATGGTGTAGAAGTGAACTCCATCACYGATCCAATCCGCCAGAAGGCTTTGAAAACTATGATTGAGACATATGGTCAAACGCCAAGACAGCTGTTCCCATTGCCTCACAGCCCACGAGTCACCCACAAAAAYCTTGCCACATCATCAGAGTCAAGTTCCACAACATCACTTGGTGCAACTTCCAAGAATGACGGCGATACAATATCATCAACAGCAACATTTAAAAATCGTTTTCACCAGTCCTTCTCATCTGAAAACAGCTCGACAGGAACAGTYGAAACATTTGYAGGTGATCGTAAGATTGAGTTGCAAGGGTCATGTGTTCATCTGTATGGTCATAACCAAGTTGTCACATGTCTACACATATGCCATGAGTACAGCGTGCTGGTCAGCGGTAGTCRAGATGGCACAGCAATAATATGGGATATCTGTAGGTTAAGTTATATTCGCACACTTCAGCATACAACGGCTGTGCAGACGTTAGCAGTAAGTCGGCGATCAGGTGATGTCGCTACTGTCTCTCATCAAGATGAAGGCATTGATGAAGATGATAGTTACCATGACAACCAAGGTAGTATGTTGTATCTTTGGACTGTTAATGGGAGGCCTGTGTCAAGCGCCAAATGTGATCATATGATAAGTTGTGTGGATTTCTCACGTGCTCCAGAAGGCGTGTCAGTTAATGTCATAGCAACAGGGCTTAGCAACGGTGCAATAAGGTTATGGAGCACATGGGACTTGCAGCACATACGGGACATTGCACCAGAGCARAACCTCCATCCAATAATCTCAGTTGCCTTCAGTGAAGACAGTCAGCGGCTTTTTGCTTTAAACAATCAATCACGKTTAATCATGTGGCAGAGAAAAGACAAAATCATCGCCAGGCCCCCCTCCATAATAACATTCCCATCATCTTATGTTGGTCCAAGAGCAACCCAGGATGGAAGARCAAAGACTGAGAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99698	Lysosomal-trafficking regulator OS=Homo sapiens OX=9606 GN=LYST PE=1 SV=3
P97412	Lysosomal-trafficking regulator OS=Mus musculus OX=10090 GN=Lyst PE=1 SV=1
Q9TTK4	Lysosomal-trafficking regulator OS=Bos taurus OX=9913 GN=LYST PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002273 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14844 all species →	PH_BEACH	PH domain associated with Beige/BEACH	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02138 all species →	Beach	Beige/BEACH domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036372 all species →	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR023362 all species →	Domain	PH-BEACH domain	Interproscan
IPR000409 all species →	Domain	BEACH domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ24808.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.