Gene detail

Detailed information of KXJ25152.1 in Exaiptasia diaphana

Genomic Location: LJWW01000044.1:311028...314816
NR annotation: XP_020908035.1, soma ferritin [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42577	Soma ferritin OS=Lymnaea stagnalis OX=6523 PE=2 SV=2
P49947	Ferritin, middle subunit OS=Salmo salar OX=8030 PE=2 SV=1
P17663	Ferritin heavy chain B OS=Xenopus laevis OX=8355 GN=fth1-b PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00210 all species →	Ferritin	Ferritin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR009040 all species →	Domain	Ferritin-like diiron domain	Interproscan
IPR012347 all species →	Homologous_superfamily	Ferritin-like	Interproscan
IPR008331 all species →	Domain	Ferritin/DPS protein domain	Interproscan
IPR001519 all species →	Family	Ferritin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11431 all species →	FERRITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006826 all species →	Biological Process	iron ion transport	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0006880 all species →	Biological Process	intracellular sequestering of iron ion	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00522	FTH1; ferritin heavy chain	EC:1.16.3.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ25152.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

3,715.7Max TPM

2,682.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	2,381.77	3,307.56
whole animal · symbiotic	36	36	2,983.84	3,715.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3,307.56
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,979.82
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,720.93
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,717.16
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,716.76
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,689.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,683.69
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,640.70
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,638.59
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,608.97
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,581.45
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,476.57
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,472.90
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,467.54
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,464.85
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,460.05
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,423.41
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,368.47
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,263.39
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,237.19
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,187.71
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,167.57
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,166.94
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,155.03
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,142.87
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,138.68
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,137.33
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,136.27
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,115.33
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,106.12
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,093.91
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,081.57
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,081.20
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,057.43
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,031.79
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2,025.02
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,715.71
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,557.19
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,446.82
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,358.90
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,102.34
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,085.78
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,078.03
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,076.94
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,068.56
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,066.54
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,066.36
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,051.10
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,050.20
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,044.03
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,041.75
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,028.54
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,004.56
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3,001.49
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,993.30
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,964.07
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,958.14
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,939.41
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,886.48
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,882.50
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,872.16
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,858.43
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,830.87
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,813.34
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,787.36
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,781.76
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,743.87
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,718.95
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,660.71
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,646.37
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,635.18
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2,600.34

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.