Gene detail

Detailed information of KXJ25199.1 in Exaiptasia diaphana

Genomic Location: LJWW01000044.1:781308...788001
NR annotation: KXJ25199.1, Presenilins-associated rhomboid-like protein, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHV4	Presenilin-associated rhomboid-like protein, mitochondrial OS=Bos taurus OX=9913 GN=PARL PE=2 SV=1
Q9H300	Presenilin-associated rhomboid-like protein, mitochondrial OS=Homo sapiens OX=9606 GN=PARL PE=1 SV=2
Q5R5H4	Presenilin-associated rhomboid-like protein, mitochondrial OS=Pongo abelii OX=9601 GN=PARL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006085 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01694 all species →	Rhomboid	Rhomboid family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035952 all species →	Homologous_superfamily	Rhomboid-like superfamily	Interproscan
IPR022764 all species →	Domain	Peptidase S54, rhomboid domain	Interproscan
IPR050925 all species →	Family	Rhomboid protease S54	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43731 all species →	RHOMBOID PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09650	PARL, PSARL, PCP1; rhomboid-like protein	EC:3.4.21.105	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ25199.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

62TPM > 0

2Conditions

7.2Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	2.90	7.24
whole animal · symbiotic	36	31	3.20	6.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.24
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.71
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.56
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.25
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.21
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.01
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.77
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.71
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.69
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.62
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.60
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.55
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.51
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.44
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.40
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.32
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.31
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.18
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.17
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.11
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.06
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.89
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.81
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.66
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.61
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.55
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.43
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.28
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.05
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.84
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.81
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.16
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.01
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.95
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.75
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.67
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.63
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.44
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.38
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.37
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.28
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.94
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.88
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.86
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.70
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.65
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.64
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.56
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.54
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.53
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.46
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.43
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.43
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.33
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.27
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.81
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.69
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.60
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.56
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.55
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.28
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.96
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.