Gene detail

Detailed information of KXJ26136.1 in Exaiptasia diaphana

Genomic Location: LJWW01000033.1:194886...203357
NR annotation: XP_020904049.1, histone-binding protein RBBP7 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHL3	Histone-binding protein RBBP4 OS=Bos taurus OX=9913 GN=RBBP4 PE=1 SV=3
Q09028	Histone-binding protein RBBP4 OS=Homo sapiens OX=9606 GN=RBBP4 PE=1 SV=3
Q60972	Histone-binding protein RBBP4 OS=Mus musculus OX=10090 GN=Rbbp4 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006269 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12265 all species →	CAF1C_H4-bd	Histone-binding protein RBBP4 or subunit C of CAF1 complex	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR022052 all species →	Domain	Histone-binding protein RBBP4, N-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050459 all species →	Family	WD repeat RBAP46/RBAP48/MSI1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22850 all species →	WD40 REPEAT FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581 all species →	Cellular Component	NuRD complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10752	RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26136.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

148.2Max TPM

64.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	54.07	148.22
whole animal · symbiotic	36	34	75.00	111.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	148.22
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.14
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.22
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.11
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.80
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.30
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.78
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.03
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.76
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.46
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.18
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.02
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.47
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.18
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.09
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.29
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.21
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.20
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.23
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.70
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.12
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.37
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.57
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.47
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.37
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.65
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.73
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.59
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.77
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.59
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.33
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.04
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.84
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.86
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	111.44
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	101.34
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.43
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.65
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.75
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.65
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.65
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.91
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.32
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.17
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.62
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.44
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.61
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.24
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.61
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.45
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	76.91
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	74.43
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.94
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.87
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.60
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.48
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.62
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.57
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.22
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.09
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.43
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.44
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.21
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.44
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.56
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.17
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.92
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.78
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.