Gene detail

Detailed information of KXJ26352.1 in Exaiptasia diaphana

Genomic Location: LJWW01000030.1:184189...187652
NR annotation: XP_020902731.1, calcium/calmodulin-dependent protein kinase type II delta chain [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13557	Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Homo sapiens OX=9606 GN=CAMK2D PE=1 SV=3
Q6PHZ2	Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Mus musculus OX=10090 GN=Camk2d PE=1 SV=1
Q95266	Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Sus scrofa OX=9823 GN=CAMK2D PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF08332 all species →	CaMKII_AD	Calcium/calmodulin dependent protein kinase II association domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR013543 all species →	Domain	Calcium/calmodulin-dependent protein kinase II, association-domain	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24347 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004683 all species →	Molecular Function	calcium/calmodulin-dependent protein kinase activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04515	CAMK2; calcium/calmodulin-dependent protein kinase (CaM kinase) II	EC:2.7.11.17	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26352.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

55.5Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	17.69	29.84
whole animal · symbiotic	36	33	22.71	55.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.84
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.37
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.22
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.64
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.56
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.16
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.55
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.44
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.16
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.14
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.14
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.02
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.92
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.70
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.55
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.54
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.16
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.55
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.45
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.78
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.77
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.60
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.40
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.46
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.06
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.91
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.63
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.28
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.14
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.00
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.00
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.59
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.05
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.54
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.68
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.34
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.47
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.24
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.38
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.09
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.57
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.26
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.13
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.27
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.14
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.83
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.83
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.70
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.49
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.33
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.07
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.97
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.93
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.86
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.39
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.44
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.82
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.81
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.33
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.81
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.27
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.83
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.36
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.30
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.42
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.47
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.